Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3968 ATGTTGGAATCCTTAGCTTCTTGTCAAAGCTTTAAGGGATATGACTTAACCAAACAAAAGAGTCCGGGTTATTCTCGTGCTAGAAGTTCTATGTTCATGCTTTATTCAGTTGACAAGCAATTGTCACTACTATCACACGGTGCTCGTCATGGGGTGTTTCATAGGCCTACTGTGTCAGGAAGTTTCATTGAAAGGAAGCCTCTCAGTCTTCCTCCATTTTCTGGTTGGAAAGGATTCCATTTCCCTAAGTATAGGCCGGTACGATGGGAGCGACTAAAGGCGAATGTAGCATATGATGTTGCTGATGCTGTTGAAGTCATCAATGATTTGGGATTGGACACTCTCACTTTCTTGGCTGTGACTGTCGTAATTGTGCCCACATTCAAGTCAATTAAAGCCAGTCCTATACTTGGTTTCTTCTGTGCTGGGGTGGTACTCAATCAGTTTGGTTTAATTAGAAACATCACAGATGTTAAAGCTTTGTCTGAATGGGGGATCCTTTTCTTGCTGTTTGAGATGGGCTTAGAACTTTCACTGGCACGTCTGAAAGCTCTTGCAAAATATGCCTTTGGAATGGGATTGGCTCAGGTTGTACTATCTACCTTAGCGTTTACTGCTTTTGAGCTTCCAACAAATGGGGCTATTGGAACAAAAATTTTGCAATTCCTTTTCCACTCGAGGCCTGATCTGGTGAACATCAGAAGTATCGACGAAGCTGTAGTGATTGGTGCTGCTCTCTCTCTGTCATCTTCTGCATTTGTTCTACAGCTTCTTGCAGAGAAAGGTGAGCTTCCTACAAGATTTGGTTCAGCAACTCTTGGAATACTTCTTCTCCAGGACTTGGCTGTTATCCCTCTTTTGGTCATACTTCCAATTCTAGAGAGCCAGAATATGTCTGCGGAAAGTGTTTGGCCTATGCTTGTTCAAGAAAGTTTGAAGGCATTAGGTGGATTGGGTCTTCTTTCTCTTGGGGCAAAATTTATTCTCAGTAGAGTTTTTCAGATTGTTGCAGATACAAGGAGCTCAGAGGCTTTTGTTGCTCTTTGCTTGTTGACTATTGCTGGGACTTCACTTGTCACACAGCATTTGGGCTTTAGTGATACGCTTGGAGCATTTTTAGCTGGGGCAATCTTAGCAGAAACAAATTTCAGGACCCAGATTGAAGCTGACATAAGACCATTTAGAGGCTTGCTGCTTGGATTATTTTTTGTAAGTACGGGGACTTCAGTTGACATGCAGCTCCTATTGCGAGAGTGGCCAAATGTACTTGCACTCTTGGGAGGTTTAATTGCTATCAAGACATTGATCATAACTGCAATTGGTCCTCGTGTTGGGCTTACTTTACAAGAAAGTGTAAGAATAGGATTTCTTCTATCCCAAGGAGGCGAGTTTGGATTTGTAGTATTCTCTTTAGCAAATAGGCTCGGGGTACTTCCACTTGAGCTCAACAAGCTGCTCATAATCGTTGTTGTATTGTCAATGGCATTAACCCCAGTTCTGAATGAAGCTGGAAGGAGAGCTGCTAAATTTATTGACGAGAAATCAGAAATTGAGAATAAACAAAAAGCTTCTGAGGTGGTTAACTTCAATGTTAGTGAACCTGTTGTTATCCTTGGATTTGGACAAATGGGTCAGGTCCTTGCCAATTTCCTGTCCAACCCATTGGCTTCAGGTGGAGATAGTGATGTAACAGGATGGCCTTATGTGGCATTTGATCTTGACCCCACAGTAGTAGAGGGAGCTAGAAAACTTGGTTTTCCTATTCTCTATGGGGATGGATCACGTCTAACCGTTCTTCAATCTGCTGGTATCTATTCTCCAAAAGCTATTATGGTTATGTACACTGGGAAGAAGAAGACAATTGAAGCTATTCAGAGGCTACGAGTGACATTTCCTGCAATCCCAATCTATGCTAGAGCTAGAGATCTCAAAAATCTTTTAGAGTTGAAGAAAGCAGGTGCAACGGATGCCATTTTGGAAAATGCAGAGACTAGCTTGCATCTGGGTTCTAAGCTGCTGAAAGGCCTTGGAGTAATGTCTGATGACGTAGCATTTTTGAGCCAGCTTATAAGAGATTCCATGGAGATACAAGCTGAAGAAGCAATCAACCAATCAGAAAATCGTGAATTAGATAAAATGAAACCGATGCAGGTGAGAGTTTCTGACTTCAAGGAGACACGTGAAACAACTTCAACAGAATATGAATTATCAGTGCTGAACCGGAAAGATCAAGCTTCTTTGGATATAATTCAGAAGGAAGTAGATCCTGATAAACAAGATTATGCATTAAATCAAGCTGTTAAATTAGAAGGAAATGGTGTATTACGTAGCAAACAAGGTGCTGAAGAAAGCTCAATGGTTGGATCTCAAGATGCTCTAGGACAGAAGAATCTGGTAGACGAGGAACCCTGA 2412 0.4175 MLESLASCQSFKGYDLTKQKSPGYSRARSSMFMLYSVDKQLSLLSHGARHGVFHRPTVSGSFIERKPLSLPPFSGWKGFHFPKYRPVRWERLKANVAYDVADAVEVINDLGLDTLTFLAVTVVIVPTFKSIKASPILGFFCAGVVLNQFGLIRNITDVKALSEWGILFLLFEMGLELSLARLKALAKYAFGMGLAQVVLSTLAFTAFELPTNGAIGTKILQFLFHSRPDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDLAVIPLLVILPILESQNMSAESVWPMLVQESLKALGGLGLLSLGAKFILSRVFQIVADTRSSEAFVALCLLTIAGTSLVTQHLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVSTGTSVDMQLLLREWPNVLALLGGLIAIKTLIITAIGPRVGLTLQESVRIGFLLSQGGEFGFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPVLNEAGRRAAKFIDEKSEIENKQKASEVVNFNVSEPVVILGFGQMGQVLANFLSNPLASGGDSDVTGWPYVAFDLDPTVVEGARKLGFPILYGDGSRLTVLQSAGIYSPKAIMVMYTGKKKTIEAIQRLRVTFPAIPIYARARDLKNLLELKKAGATDAILENAETSLHLGSKLLKGLGVMSDDVAFLSQLIRDSMEIQAEEAINQSENRELDKMKPMQVRVSDFKETRETTSTEYELSVLNRKDQASLDIIQKEVDPDKQDYALNQAVKLEGNGVLRSKQGAEESSMVGSQDALGQKNLVDEEP* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3968 803 MobiDBLite consensus disorder prediction 772 803 - -
Lja4g3968 803 Pfam Sodium/hydrogen exchanger family 116 501 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lja4g3968 803 Gene3D - 534 704 - -
Lja4g3968 803 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 533 677 IPR036291 -
Lja4g3968 803 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 63 738 - -
Lja4g3968 803 Coils Coil 500 520 - -
Lja4g3968 803 Gene3D - 109 509 IPR038770 -
Lja4g3968 803 Pfam TrkA-N domain 535 658 IPR003148 GO:0006813
Lja4g3968 803 ProSiteProfiles RCK N-terminal domain profile. 534 666 IPR003148 GO:0006813
Lja4g3968 803 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 63 738 - -
Lja4g3968 803 MobiDBLite consensus disorder prediction 778 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3968 Lja-Chr4 72717515 72737151 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3968 1 736 Inorganic Solute Cotransporters AT4G04850 71.409 0.0 1000
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3968 - - aprc:113858933 1236.09