Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3965 ATGGCTTCATCGGAGATCGAGGTGGTGGTGTCATCGGATTCCAATCCCAACAACAACGACCAGCTTCCCACATTCGACGTCCTCACTGCCTCTGCTCATGGTGACCTTCACAAATTGAAGACCTTTGTGGAGCAAGATGGCGCTTCTGTCTCTGTTCCCGATGCTAATGGCTACTATGCTCTTCAATTGGCTTCCCTTAACAACTTCCATGAAATTGTCCATTATCTCATTCAGCATGGGGCTGATGTCAATGCTAAAGATAAAATGCAACAAACGGCATTGCATTGGGCGGCAGTTCATGGTTCAATTGCAGCTGCTGATGTGCTATTGGAGAATGGTGCTCGGGTCGAAGCTGCAGATATAAATGGATACAGGGCAGTTCATGTTGCTGCACAATATGGACAGACAGCTTTCTTAAATCACATTGTTGTTAAGTACCATGCTGATTTTGATGTGCCTGATAATGACGGGAGGAGTCCTCTTCACTGGGCTGCATATAAAGGATTTCCTGATACAATAAGATTGCTTCTATTTAGAGATGCAAGTCAAGGAAGACAAGATAAAGATGGTAGTACACCAGTGCACTGGGCTGCTTTAGGAGGACATGCAGAGACATGTGCTGTTCTTGTGCATGCAGGCACAAAGAAAGAATTAATGGTGAAGGACAATGCAGGATTCACTCCTGTACAGCTTGCATATGATAAAGGTCATCGGCTTGTCGCCCACTTCCTTTCTAATCAACAAAGGGCTGATAGAAACAACTGGAGAGGTAAACTTTGTAGTGGGATGATGGTTGATAGTGGTTATGCTCCCATTTTATTGTGTACTATAGTCTTTGTCACGATCCTCTTCTTCAACTCAGTCGTTGCAGCTCCCAACCTTAAAAAGATTACTGCTGTTGTTGGACTTTGGGCGTGGACAGCTCTTTCGCTAGCAACTGGTTCCTTGTATATGTTTTATAGGTGTAGCTGTAAAGATCCAGGTTATATAAAACGCCCGGGAGACTTGGGTGCTCCGAGTGACACAGAGGATCCTTTATTGAATATTGATCTGAATAGTTCTTCGGTTTGGATGGGAAATTGGTCTCAGCTTTGCCCTACCTGCAAGATAATAAGACCTGTACGATCTAAACATTGCCCTACTTGTAAACGTTGTGTGGAACAGTTTGACCACCATTGTCCATGGATATCTAACTGTGTTGGGAAGAGGAACAAAAGGGATTTCTTTATTTTTATCTGCATGGAATTTTTGGCATCTTTCCTTGCTGGTGCTATTGCAATTCAAAGAATTTGGACATCAATACCAGGATTTCCAGAAGGAGAAACATGGATCCATCATGTGGTAGTAAGACATCCAGGTCTTGTTACATTTTTGGTGATGGACACAGTTATCTTCATTGCAGCTACGACTTTAACGATAACACAGGCTTCCACGATTGCTCGTAATTTGACGACAAATGAAGTAGCAAATTCAACCCGTTATCAGTATCTTCGTGGTCCCGATGGCCGGCTCAGAAACCCTTACAATCATGGTTGTTGGAAGAATTGTGCTGATTTCCTATTTCTGGGCTATACAAATGATGATGACATTGCTTGGACTCCATTACAACAGGTTGCAACTTAA 1623 0.4313 MASSEIEVVVSSDSNPNNNDQLPTFDVLTASAHGDLHKLKTFVEQDGASVSVPDANGYYALQLASLNNFHEIVHYLIQHGADVNAKDKMQQTALHWAAVHGSIAAADVLLENGARVEAADINGYRAVHVAAQYGQTAFLNHIVVKYHADFDVPDNDGRSPLHWAAYKGFPDTIRLLLFRDASQGRQDKDGSTPVHWAALGGHAETCAVLVHAGTKKELMVKDNAGFTPVQLAYDKGHRLVAHFLSNQQRADRNNWRGKLCSGMMVDSGYAPILLCTIVFVTILFFNSVVAAPNLKKITAVVGLWAWTALSLATGSLYMFYRCSCKDPGYIKRPGDLGAPSDTEDPLLNIDLNSSSVWMGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFICMEFLASFLAGAIAIQRIWTSIPGFPEGETWIHHVVVRHPGLVTFLVMDTVIFIAATTLTITQASTIARNLTTNEVANSTRYQYLRGPDGRLRNPYNHGCWKNCADFLFLGYTNDDDIAWTPLQQVAT* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3965 540 Gene3D - 5 142 IPR036770 -
Lja4g3965 540 SUPERFAMILY Ankyrin repeat 20 246 IPR036770 -
Lja4g3965 540 PANTHER - 3 529 - -
Lja4g3965 540 Gene3D - 143 255 IPR036770 -
Lja4g3965 540 ProSiteProfiles Ankyrin repeat region circular profile. 189 213 - -
Lja4g3965 540 ProSiteProfiles Ankyrin repeat profile. 189 221 IPR002110 GO:0005515
Lja4g3965 540 SMART ANK_2a 189 218 IPR002110 GO:0005515
Lja4g3965 540 SMART ANK_2a 156 185 IPR002110 GO:0005515
Lja4g3965 540 SMART ANK_2a 56 85 IPR002110 GO:0005515
Lja4g3965 540 SMART ANK_2a 89 118 IPR002110 GO:0005515
Lja4g3965 540 SMART ANK_2a 224 254 IPR002110 GO:0005515
Lja4g3965 540 SMART ANK_2a 122 152 IPR002110 GO:0005515
Lja4g3965 540 ProSiteProfiles Ankyrin repeat region circular profile. 156 182 - -
Lja4g3965 540 ProSiteProfiles DHHC domain profile. 363 413 - -
Lja4g3965 540 PANTHER PROTEIN S-ACYLTRANSFERASE 24 3 529 - -
Lja4g3965 540 ProSiteProfiles Ankyrin repeat profile. 156 188 IPR002110 GO:0005515
Lja4g3965 540 ProSiteProfiles Ankyrin repeat region circular profile. 56 88 - -
Lja4g3965 540 ProSiteProfiles Ankyrin repeat region circular profile. 89 120 - -
Lja4g3965 540 Pfam Ankyrin repeats (3 copies) 30 119 IPR002110 GO:0005515
Lja4g3965 540 Pfam Ankyrin repeats (3 copies) 120 185 IPR002110 GO:0005515
Lja4g3965 540 ProSiteProfiles Ankyrin repeat profile. 56 88 IPR002110 GO:0005515
Lja4g3965 540 MobiDBLite consensus disorder prediction 1 21 - -
Lja4g3965 540 ProSiteProfiles Ankyrin repeat profile. 122 155 IPR002110 GO:0005515
Lja4g3965 540 ProSiteProfiles Ankyrin repeat profile. 89 121 IPR002110 GO:0005515
Lja4g3965 540 Pfam DHHC palmitoyltransferase 363 490 IPR001594 GO:0016409
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3965 Lja-Chr4 72691846 72701038 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3965 30 204 Ion Channels AT2G25600 30.387 5.54e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3965 K20032 - gmx:100798740 940.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3965 4 72691846 72701038 Lja4g3965 4 72691846 72701038 ECH