Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3963 ATGAGACATACCTTGAGCTCTTTTGAGTGCAAAGTTGGTTTTCTCATGGAGATTTCATCCATTACAGGATTACCTGATCAGGAAATGATGGGGGATCCTACATTACTCCATCAGTGGCACAGTGATGATTCTAGCTTGCTGCCAATGGCTGCTGCTTTTGGAGAGACTTTGCAACATCATTCATTCACTTATCCAAACTTCAACCTCATAACTCCCATGAATCAGTTTCAGTTGGGTTCAAATCACATGAGTCAGTTTCAGTTGGGGTTGCAAAAACTTAAGGATGAGATGGGTTGTCCAACAATCAATATCACAACTCCTCTGGACATGATCTCTCAAGGAAACCTTGAGGATCAAAACTATGTCTTCAAGACCTGCCAGGAGGATCACAAAAAGATATTGACACGTCCAAAACTTTCTCAACCTCAGGACCACATTATAGCTGAAAGAAAGCGGCGAGAGAAGCTCAGCCAGCAGTTCATTGCTCTATCTGCCCTTGTCCCTGGACTACAAAAGATGGACAAAGCTTCTGTTCTTGGAGATACTATCAAGTACCTGAAGCAACTGCAGGAGAAAGTGAGGGCTCTTGAGGAGGAGCAGAACTTGAAGAAAAATGTGCAGTCTGTGGTAATTGTAAAGAAGTCTCAACTTTCCAATGATGTTGAAAACTATTCTCTAGAATCTGGTGGTTCCTTTGACAAGGAACTGCCTGAAATTGAAGCAAGATTTTGTGAGAGAAATGTTCTCATACGAGTTCACTGTGAGAAGAGCAAAGGAGTGGTAGAAAAAACAATCCATGAAATTGAGAAACTCCACCTAAAAGTCATCAATAGCACTGCTTTGACATTTGGGAGCTGTGCCCTTGATATAACAATTATTGCTCAGGTAAATTTTGTACCTTCTAATGGCCCAAAGCTGGAAGTTCATACAAATCAATATATGAGAAAATCAATTGAGCTCCAATGTAGTATCTAG 975 0.4092 MRHTLSSFECKVGFLMEISSITGLPDQEMMGDPTLLHQWHSDDSSLLPMAAAFGETLQHHSFTYPNFNLITPMNQFQLGSNHMSQFQLGLQKLKDEMGCPTINITTPLDMISQGNLEDQNYVFKTCQEDHKKILTRPKLSQPQDHIIAERKRREKLSQQFIALSALVPGLQKMDKASVLGDTIKYLKQLQEKVRALEEEQNLKKNVQSVVIVKKSQLSNDVENYSLESGGSFDKELPEIEARFCERNVLIRVHCEKSKGVVEKTIHEIEKLHLKVINSTALTFGSCALDITIIAQVNFVPSNGPKLEVHTNQYMRKSIELQCSI* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3963 324 Coils Coil 179 206 - -
Lja4g3963 324 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 17 75 - -
Lja4g3963 324 Gene3D - 139 214 IPR036638 GO:0046983
Lja4g3963 324 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 86 297 - -
Lja4g3963 324 Pfam Helix-loop-helix DNA-binding domain 143 190 IPR011598 GO:0046983
Lja4g3963 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 208 IPR036638 GO:0046983
Lja4g3963 324 PANTHER BHLH TRANSCRIPTION FACTOR 86 297 - -
Lja4g3963 324 PANTHER BHLH TRANSCRIPTION FACTOR 17 75 - -
Lja4g3963 324 CDD bHLH_AtNAI1_like 143 215 - -
Lja4g3963 324 SMART finulus 146 195 IPR011598 GO:0046983
Lja4g3963 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3963 Lja-Chr4 72637328 72639877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3963 140 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 58.491 8.58e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g3963 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3963 - - lja:Lj0g3v0292969.1 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3963 4 72637328 72639877 Lja4g3963 4 72637328 72639877 ECH
Lja4g3963 4 72637328 72639877 Lja6g3208 6 60483482 60486123 PCT