Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3938 ATGAGCAGGACTCTCTTGATTGTGATAGTAGGGACATGCATAGGCTTTGTGGTTGGAGTGGGTTTAGCCTTTTCAATTTTCTTCTGCTTCAGATGTGGAAGGAAGCGGTGTATGAAGGTGGAGAAGAGTGGTTCAATGAGAACCATTCCTGTTCATGTCAAAGAGGCTGATTCCAGCACAACATTATCAGACTCCAATGTGGCTCTGGAGTCACCCAGAACATCTGAGTGGAGTAACATGCCTTTATGGTTGGAAGGACTTAGGAGGAAGAATGTGGTTTCAGCATGTGGAATTCCCAAATATTCTTACAAAGATATACAAAAGGCTACTTCTAATTTCACAACCATCATAGGCCATGGAGCGTTTGGTCCCGTTTACAAAGCGCTCATGTCTACAGGTGAGACAGTTGCGGTTAAAGCTCTTGGTACTAATTCAAGGCAAGGAGAAGAGGAATTTTTAACTGAGGTTCTATTACTAGCAAGATTACATCACAAAAACCTTGTGGGTTTAGTGGGATATTCTGCAGAAAGAGGGCAGCATATGCTTCTTTACAGTTACATGAGCAATGGCAGTCTTGCTTCTCATTTGTATGGCAAAAATCATGAGCCATTGAGCTGGGATTCGAGACTTAACATCGCACTAGATGTTGCAAGAGGACTGGAATATCTACATCATGGGGCTGCTCCTCCTGTTGTGCATCGTGACATCAAGTCTTCCAACATACTGTTAGATGAGTTTATGAGAGCTAAGGTCACTGACTTTGGACTTTCCAGACCAAAGATGATCACGCCTCGTAAATCAAATGTCAGAGGAACTTTTGGATATCTTGATCCTGAGTACATGTCTTCAAAAACCTTCACTAAGAAAAGTGATGTTTACAGTTTTGGTGTGCTACTTTTCGAGCTTATTACGAGCAGGAATCCACAGCAAGGGCTCATGGAATATGTAAATCTAGCAGCCATGGAAGGTGAGGGTAAGAATGGATGGGAAGAAATTGTGGATTCGCAACTAAATGGAAAATATGATGTGCACAAGCTCAATGACATGGCTTCTCTTGCATTTAAATGTGTCAATGGAGTTTCCAAAGTTCGACCTTCGATGAGGGACGTTGTTAGTGAACTATCTCAGCTGTGTAAGAAGCATAGTAGAAACGATAGCCAAACATCTCTTGCTACATTAAAGGAAGTGTCCATTGAAGTGGATGACCTAGAAACTCATGAGTTTTCATCAATTGAGTGCTCAAAGGCGCTGCGCAGATTGCATAGCCGATAA 1272 0.4222 MSRTLLIVIVGTCIGFVVGVGLAFSIFFCFRCGRKRCMKVEKSGSMRTIPVHVKEADSSTTLSDSNVALESPRTSEWSNMPLWLEGLRRKNVVSACGIPKYSYKDIQKATSNFTTIIGHGAFGPVYKALMSTGETVAVKALGTNSRQGEEEFLTEVLLLARLHHKNLVGLVGYSAERGQHMLLYSYMSNGSLASHLYGKNHEPLSWDSRLNIALDVARGLEYLHHGAAPPVVHRDIKSSNILLDEFMRAKVTDFGLSRPKMITPRKSNVRGTFGYLDPEYMSSKTFTKKSDVYSFGVLLFELITSRNPQQGLMEYVNLAAMEGEGKNGWEEIVDSQLNGKYDVHKLNDMASLAFKCVNGVSKVRPSMRDVVSELSQLCKKHSRNDSQTSLATLKEVSIEVDDLETHEFSSIECSKALRRLHSR* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3938 423 Gene3D Transferase(Phosphotransferase) domain 1 187 401 - -
Lja4g3938 423 CDD STKc_IRAK 117 377 - -
Lja4g3938 423 PANTHER OS01G0253100 PROTEIN 3 408 IPR045271 GO:0004714|GO:0006468
Lja4g3938 423 SUPERFAMILY Protein kinase-like (PK-like) 92 373 IPR011009 -
Lja4g3938 423 PANTHER DUAL-SPECIFICITY KINASE DOMAIN PROTEIN 3 408 - -
Lja4g3938 423 SMART serkin_6 111 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3938 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Lja4g3938 423 Pfam Protein tyrosine and serine/threonine kinase 113 374 IPR001245 GO:0004672|GO:0006468
Lja4g3938 423 Gene3D Phosphorylase Kinase; domain 1 73 186 - -
Lja4g3938 423 ProSiteProfiles Protein kinase domain profile. 111 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3938 Lja-Chr4 72355520 72359596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3938 100 401 Receptor kinase-like Gene Family AT2G28970 45.570 1.35e-74 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Lja4g3938 PK_Tyr_Ser-Thr 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3938 - - gmx:100816549 611.683