Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3931 ATGGGACATGTTTACGATGATAGGCTTTCCATGTCTCTAGATGACTTATGTTTTAATGCTGAAAGTGGTAACAACAGGGGAAGGATGGGAAGGAGGCGCTATGACAACGACGAAAACCAAACATTCAAATCGAAGAACCTGGAGGCGGAAAGGAAGAGAAGAGAGAAGCTCAGTACCAGGCTCTTGATGCTGCGGTCTTTAATGAACAAGGCAACGATTATTGACGATGCAATCACTTACATTAAGAAATTGCAAGAGGAGGTTGTGAGCCTCACCCAAGAGCTTCAGGAAGTGGAAGTAACCTTAGAAATTTCAAAGCCAAAGGTAGATGAACTTGTTGATGCTGCAGAAGAGATGAAGAAATGGGGGATACAGGAAGAGGTACAGGTGACACAAATGAATGGGAACAAATTGTGGGTGAAGATGATCATTGAGAACAAGAGGGGGACTTTCAGGAAATTGGCGGAGTCTCTCGATACTTGTAGCATTGCAATGATGGACACCAATCTCACAGCCATAAAAGGAGCCTTAGTAATAACAACCTGCATACAGGGCATGGATGGTGAAGCACTTGAAGTTCATCAAATCAAACAATTGTTGCTAGAAATTGTCAGAGCCATTTAG 624 0.4295 MGHVYDDRLSMSLDDLCFNAESGNNRGRMGRRRYDNDENQTFKSKNLEAERKRREKLSTRLLMLRSLMNKATIIDDAITYIKKLQEEVVSLTQELQEVEVTLEISKPKVDELVDAAEEMKKWGIQEEVQVTQMNGNKLWVKMIIENKRGTFRKLAESLDTCSIAMMDTNLTAIKGALVITTCIQGMDGEALEVHQIKQLLLEIVRAI* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3931 207 MobiDBLite consensus disorder prediction 27 51 - -
Lja4g3931 207 SMART finulus 47 90 IPR011598 GO:0046983
Lja4g3931 207 Coils Coil 74 101 - -
Lja4g3931 207 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 9 207 - -
Lja4g3931 207 Gene3D - 39 111 IPR036638 GO:0046983
Lja4g3931 207 PANTHER TRANSCRIPTION FACTOR DYT1 9 207 - -
Lja4g3931 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 39 104 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3931 Lja-Chr4 72302553 72303842 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3931 28 206 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 39.796 3.77e-37 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3931 - - lja:Lj2g3v1278950.2 241.121