LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja4g3925	ATGACACAACTGAAATATAGCACTGCTCTATTGACTAATTCTATGATTTTTTTCAAATCATTATATCTATTACTTGATTTCCTTCCCTTTAGTCATAGAAAACAACTTCCGGGGGGTGGGGGGGTGGGGACTTCTTTGCTTAGTTACCACCTTCAACTAATTGGGACACCGAAGTCTCTAACACACCACTACAAACGTAGTTTTAGTGGCTTTGCTGCGAAGCTAACTAAAGAAGAAGCAGATAAAGTGGCTGGACTTGATGGGGTGATATCTGTCTTTCCCAGTACAAAGAGACCACTTCAGACAACAAAGTCTTGGGATTTTATTGGCTTTCCATTAAACGTGGAAAGAACAAATGCTGAACAATCTGAAAGCTTCAATGATAAAGGATTAGGTCCCCCACCTAGTAAATGGAAGGGAACCTGTCAAACCTCTTCTAATTTCACTTGCAACAATAAAATAATTGGTGCTAGATGTTACGGAGAAGAATCCTTGAATAAAGAATTCTTGTCTCCAAGAGACTCAATTGGGCATGGGACTCATACTGCTTCAATAGCAGCTGGTAACCCAGTTAGCGGGGCAAGCATGTTAGGCCTGGCAGAAGGAACAACAAGGGGAGGGGCAACATCAGCACGTATTGCGGTCTACAAAGTCTGCTGGGACGACGGATGCGATGATGCAGACATTTTATCTGCATTTGATGATGGAATTGCTGATGGGGTTGACATCTTTTCGGTCTCAATAGGAGCGAGTGACACTGACAAGGCTGGAAATTATCTTGGAAACAGTATATCCATAGGAGCATTTCATGCCATGAGGCATGGGATACTGACAATAGCATCGGCTGGGAACTCGGGTCCAACACTTGGGGCTGTAGATAATGTTCATCCTTGGTCAATTTCTGTGGCGGCTAGCACCATAGATAGAAATTTTGTGACAAGAGTAAAATTAGGAGACAACAGAATTTATGAGGGAATCTCATTAAATACATTTGACCTTAAGGGAAAATTATATCCTCTCATCTTTGCGGGTGATGCACCCAATACTAAAGCAGGCATCAATGGATCTAAATCAAGGTTTTGCAACCATGGTTCGTTGGACCAAAATTTGGTGAAGAACAAAATTGTTCTCTGCCAGAGTGCATACCCAAATGAAACTGGTCCCGCTGGTTTCCTCTCAACCGCTCAAACTTCTGCACCACTCGCACTCGCTTATGCCTTGCCTGGATCTTACCTCGACTTGAAGGATGCTGTCTCTATATTCAAATACATAAGATCCACAAGGGATTCAAGTGCAACCATATTTAAGACCGATGAGTTAGAAGATATTTCAGCCCCTGAGGTAGCCAATTTCTCATCAAGAGGTCCAAACTTAATTACCCCTGAAATTCTCAAGCCGGATTTGACTGCTCCTGGAGTAACCATCCTAGCTAGTTGGTCTCCAATAGCCCCTGTTTCGGACTCTGATTATGACCGCAGAGAGTTAAAATTCAATATTATGTCAGGCACATCAATGTCCTGCCCACACGTGTCTGGTGCAGCAGCTTACATCAAATCATTTCATCCTACGTGGTCTCCTGCTGCTATTCGTTCAGCTTTAATGACAACAGCGAAACCGCTTAGTCCCTTGAATAACGTGGAAGCAGAGTTGGCATATGGAGCAGGCCAGATTAGTCCATCCAAGGCGTTGACTCCTGGTTTAGTATATGATGCTACAGAAAGGGACTATACAAGTTTTTTGTGTGGGCAGGGCTATAGTCTAATGTCTATACAACTCATCATGGGGGGTAATACCAGCTTCTGTGGGACAACTAATGAATCAGCAAGGGATCTAAATTACCCTTCATTTTCTCTGCAAGTCCCTCACTCAGATCATACTGTATTTGCCAGGTTCAAGAGGACAGTCACAAATGTTGGCTCTCCAATGTCTACAGAAAGGGACTATACATTGACACCAAATGTTTTGGCATTCAATTCTCTTGGTCAAACAAAAACATTTGTGCTCACTCTTGATGGAGCGCTAACTGAACCTATTGTGTCAGCTTCTTTGGTTTGGGACGATGGAACATTCCAAGTGAGAAGCCCAATTGTCGTGTTTGATGTAGTGGGTTTTAATCCATCCACACCAGCTTCCCATTCCACATCTTTTTCTCCTTGTCTCTCTTTGCTTTTCCTATCTCTCATTTTTTTCACCCACTTATCTCTCTTTGGGTGTGTATGA	2220	0.4288	MTQLKYSTALLTNSMIFFKSLYLLLDFLPFSHRKQLPGGGGVGTSLLSYHLQLIGTPKSLTHHYKRSFSGFAAKLTKEEADKVAGLDGVISVFPSTKRPLQTTKSWDFIGFPLNVERTNAEQSESFNDKGLGPPPSKWKGTCQTSSNFTCNNKIIGARCYGEESLNKEFLSPRDSIGHGTHTASIAAGNPVSGASMLGLAEGTTRGGATSARIAVYKVCWDDGCDDADILSAFDDGIADGVDIFSVSIGASDTDKAGNYLGNSISIGAFHAMRHGILTIASAGNSGPTLGAVDNVHPWSISVAASTIDRNFVTRVKLGDNRIYEGISLNTFDLKGKLYPLIFAGDAPNTKAGINGSKSRFCNHGSLDQNLVKNKIVLCQSAYPNETGPAGFLSTAQTSAPLALAYALPGSYLDLKDAVSIFKYIRSTRDSSATIFKTDELEDISAPEVANFSSRGPNLITPEILKPDLTAPGVTILASWSPIAPVSDSDYDRRELKFNIMSGTSMSCPHVSGAAAYIKSFHPTWSPAAIRSALMTTAKPLSPLNNVEAELAYGAGQISPSKALTPGLVYDATERDYTSFLCGQGYSLMSIQLIMGGNTSFCGTTNESARDLNYPSFSLQVPHSDHTVFARFKRTVTNVGSPMSTERDYTLTPNVLAFNSLGQTKTFVLTLDGALTEPIVSASLVWDDGTFQVRSPIVVFDVVGFNPSTPASHSTSFSPCLSLLFLSLIFFTHLSLFGCV*	740

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja4g3925	739	Pfam	Subtilase family	172	555	IPR000209	GO:0006508\|GO:0008236
	Lja4g3925	739	ProSiteProfiles	Serine proteases, subtilase domain profile.	48	563	-	-
	Lja4g3925	739	Gene3D	-	580	701	-	-
	Lja4g3925	739	CDD	Peptidases_S8_3	100	537	IPR034197	-
	Lja4g3925	739	ProSitePatterns	Serine proteases, subtilase family, serine active site.	502	512	IPR023828	-
	Lja4g3925	739	Gene3D	-	308	441	-	-
	Lja4g3925	739	SUPERFAMILY	Subtilisin-like	144	567	IPR036852	GO:0004252\|GO:0006508
	Lja4g3925	739	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	43	101	IPR037045	-
	Lja4g3925	739	Pfam	Fibronectin type-III domain	610	698	IPR041469	-
	Lja4g3925	739	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	51	705	IPR045051	-
	Lja4g3925	739	Pfam	Peptidase inhibitor I9	57	100	IPR010259	-
	Lja4g3925	739	Gene3D	Peptidase S8/S53 domain	122	576	IPR036852	GO:0004252\|GO:0006508
	Lja4g3925	739	CDD	PA_subtilisin_like	315	434	-	-
	Lja4g3925	739	PRINTS	Subtilisin serine protease family (S8) signature	501	517	IPR015500	-
	Lja4g3925	739	PRINTS	Subtilisin serine protease family (S8) signature	174	187	IPR015500	-
	Lja4g3925	739	PANTHER	CUCUMISIN-LIKE	51	705	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja4g3925	Lja-Chr4	72023193	72028003	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja4g3925	60	699	Subtilisin-like Serine Gene Family	AT5G59100	44.543	0.0	557

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja4g3925	-		-	gmx:100784447	855.129