Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3924 ATGGCTTCTCATCTTCCTGATTACTTCAAATGTCCAATTTCTCTTGAAATAATGTCGGACCCTGTGATCCTCTGTTCCGGTCACACGTTCGACCGCGCCTCCATCAAACGGTGGTTAGACGCCGGCCACCGTACATGTCCAATTACCAAACTACCCTTACCGGAAACCCCTTTACTCATCCCTAACCACGCTTTACGAAGCTTGATATCTAACTACACTCTCCTCTCTCCTCTTCACCCCCAAATTTCACACCCCGAAACCCTAATTTCCACTCTCTCTTCTCCCTCTTCCCCCGCCGATTCCAAACTCGACTCGCTCCGCCAACTCGCTAGGTTTTCTAAACGCGACGCCGCTCTCCGCCGCCGGCTTGCCGACTCCGGCGCGGTGTCCGCAGTTCTCTCCGTTCTCGATGACTGTGCGTCAGGTACTGGCAGCGCTGCCGTGCAGGAGAAGGCGCTCTCGCTGCTTCTCAGCATCAGCCTTGACGACGACAGTAAGGTTGGGCTTGTTGCGGAGGGTGCCGTGGCGCGTGTTGTTGACGTTCTGCTCCGAGGTGATTCGTCTGATTGTCGCGCGGTGGCGGCTACGGTGGTGACGAGCCTTGCGGTTGTGGAGGTGAATAAGGCGACGATCGGGGCGTTTCCCGGGGCAATTGGAGGTTTAGTGGCGATTCTCCGTGATGGGAAGGGGAGGGAGAGGAAGGAGGCTGCTACGGCGCTGTTTGCGCTGTGTTCTTTTCCGGGTAACCGGAGGAGGGCGGTGGATTGTGGCGCGGTGCCGGTTCTGCTGTTGAGTGTGGATTCTGGGCTTGAAAGGGGTGTGGAGGTTATTGGTGTTTTGGCGAAGTGTAAAGAAGGGAGGGAGCAAATGGAAAGTTATCGGAGGTGTGTGCAGATTCTGGTTAGTGTGGTGAGGAATGGAAGCTCGAGAGGGATTCAGTATGCGTTGTTAGCACTCGCTTCGCTTTGCTTTAACAGCCAGCAAATGCTTCTGATGGCACTGGAACTAGAGGCTTTGGAACTTTCTGTTGGGTTGGTGGACGATGATAATGAGAAGGTGAGGAGGAATGCCTCCAATTTGGTTCGGGTTCTGCGCGGTGGCGGCAACCAGCTTCGGGGGAGTTCATGA 1128 0.5523 MASHLPDYFKCPISLEIMSDPVILCSGHTFDRASIKRWLDAGHRTCPITKLPLPETPLLIPNHALRSLISNYTLLSPLHPQISHPETLISTLSSPSSPADSKLDSLRQLARFSKRDAALRRRLADSGAVSAVLSVLDDCASGTGSAAVQEKALSLLLSISLDDDSKVGLVAEGAVARVVDVLLRGDSSDCRAVAATVVTSLAVVEVNKATIGAFPGAIGGLVAILRDGKGRERKEAATALFALCSFPGNRRRAVDCGAVPVLLLSVDSGLERGVEVIGVLAKCKEGREQMESYRRCVQILVSVVRNGSSRGIQYALLALASLCFNSQQMLLMALELEALELSVGLVDDDNEKVRRNASNLVRVLRGGGNQLRGSS* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3924 375 SUPERFAMILY ARM repeat 86 364 IPR016024 -
Lja4g3924 375 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Lja4g3924 375 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 365 - -
Lja4g3924 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 75 IPR013083 -
Lja4g3924 375 PANTHER U BOX DOMAIN-CONTAINING 1 365 - -
Lja4g3924 375 SMART arm_5 283 324 IPR000225 GO:0005515
Lja4g3924 375 SMART arm_5 326 366 IPR000225 GO:0005515
Lja4g3924 375 SMART arm_5 162 203 IPR000225 GO:0005515
Lja4g3924 375 SMART arm_5 116 161 IPR000225 GO:0005515
Lja4g3924 375 CDD RING-Ubox_PUB 9 50 IPR045210 -
Lja4g3924 375 Gene3D - 85 273 IPR011989 -
Lja4g3924 375 Gene3D - 274 366 IPR011989 -
Lja4g3924 375 SUPERFAMILY RING/U-box 4 73 - -
Lja4g3924 375 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Lja4g3924 375 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3924 Lja-Chr4 72001953 72003716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3924 1 366 U-box Gene Family AT4G21350 56.533 2.44e-135 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3924 - - gmx:100785141 488.419