Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3923 ATGAAGTTACTTTCCTCAAAAGAACTTCTGGGTCCATCTTTTCTGCTCTTGCTGTTGTTCTTCTCCCCTTCGTGCCACTCACTCGACAGCATTATAACCTCAAACCGACCCATCAAAGACGGCGACGTTTTGGTCTCCGACGACAGAGGAACCTTCGTGCTCGGTTTCTTCAGCCCGCGAGATGATTCAAGAAGCCGGTATGTTGGGATATGGTACAACAAAATCTCAGAACAAACCGTTGTGTGGGTCGCAAACAGAGACACTCCCCTGAAGAACAACGACACTTCTGGTGTTCTCTCCGTCCAAAATGGAAACCTCGTACTCCACGCCGCCACCATCAAGAACAGAAACGTGAACCCGGTTTGGTCAACCAATGTTTCCACCTCATTTAACGCTTCTTCAGCTAAGCTTCTAGACACAGGGAACTTGGTTTTGTTCAATGGAAACGGTAATGTTTTATGGCAGAGTTTTGATTACCCTGGTAACACTCTGCTTCCGTTCATGAAACTCGGGCTGAACCGTACAACCGGTCTGAACCGGTTCTTGAGATCGTGGAAGTCTCCGGCCGACCCGGGATCCGGAAACGTGACATATAAAATCGACCCGGCGGGGTCCCCACAATTGTACCTGAATAAGAACGGGATCCCTATATGGCGGGTCGGGTCGTGGACGGGTTTGAGATGGAGTGGGGTACCGGAGATGACACCGAGCTTCATCTTCACCGTTGAATTCATCGATGACAAAGATGAGGTAACGATAATGTACGGAGTGAAGGACCCCACGGTGCTGACGAGGATGGTGTTGGAAGAAACTGGCCACGTGCGGAGGCTGACGTGGCAGGCGCACGAGAACAGGTGGTTCCAAATTTGGTTTGGGCCGAAGGAGGAGTGCGACGGGTTCAGGCAGTGCGGGGCGAACGCGAACTGCGACCCGTACAATGCAGAGCGGTTTGAGTGTGAGTGTTTGCCCGGGTTCGAACCCAGGTTCCCGCGTGAATGGTACCTCAGAGATGGGTCGGGTGGGTGCGTGAGGAAGGGGAACGTGTCAACGTGCCGGAGCGGGAAGGGGTTTGTGAAGGTGGAGCGTGTGAAGGTTCCGGACACTTCGAAGGCGCGTGTGGAGGAGGGGATGAGGTTGAGAGAGTGCAAAGAGAAGTGTTTAGGGGATTGTTCGTGTGCGGCATACACGACTGCGAATGAGAGCTCACAGAGTGGGTGCCTTACTTGGCATGGAGGTATGGAGGACACGAGGACGTATACGAATGGGGGAGAGGATTTGTATGTTCGTGTGGATGCACTTGAATTAGCTAGATATGCAAAAAAGCCGTATGGTGCTCTTGGCAAGAAGTGGATGATTGCAGTTTTAGCTGTTGCAATTTCCTTGTTATTATTTTTGGGCACATTAGTGTATTGGTTTGTAAAGGCCAGGAAACAAGGTATGCCAAACTCTTCTCAAACTTATCGTGTTGGGATTCTTAACTCCATTAACTTGTTCAATTGTTTGATGATAGGGAGAAAAAGAAACCGCAAGTTTTCGTTTCGTCTTAGCTTTGAGGACTCTCCCAATCACCAAGAATTTGACACTACACAAAATACAGATTTACCATTCTTTGATCTTAGCACCATAGCTGCAGCAACAGACAATTTCTCTAACAAGCTTGGTCAAGGTGGTTTTGGTGCTGTTTACAAGGGTGTACTGAGTAATGGAAAGGAAATAGCAGTGAAGAGACTGGCAAAGAATTCTGGACAAGGCATAGAAGAGTTTAAAAATGAGGTTGTTTTGATTTCAAAGCTCCAACACAGAAATCTTGTGAGGATCTTAGGTTGCTCCATTGAAGGAGAGGAGAAGATGTTGATCTATGAGTATTTGCCTAACAAAAGCTTGGATTTTTTCATTTTTGATGAAGCTAAAAGGTCACTGCTAGACTGGGAAAAAAGATTTGACATCATCTGTGGGGTTGCTAGAGGGATCTTGTACCTTCATCAAGATTCACGATTAAGAATCATTCATAGAGACCTGAAGGCCAGCAATGTCTTGCTGGACTCTGCATTGGACCCCAAAATTGCAGATTTTGGCATGGCTAGAATATTTGGTGGAGATCAAATTGAAGCAAACACAAATCGTGTTGTTGGAACCTATGGCTACATGTCACCAGAATATGCCATGGAAGGACAATTTTCAATCAAGTCAGATGTATACAGCTTTGGAGTCTTACTTCTAGAGATTGTTACAGGAAGAAAGAACAGTGGTCAATATGAAGATATTAAAACCACAAATTTAGTTGGACATATATGGGATCTATGGAGAGAAGGAAGAGCCTTGGAGATTGTTGATCCATCATTGGGAGAGTCATGCTCTGACCATTTAGTCCTAAGATGCATCCAAATTGGGCTGTTATGTGTGCAGGATCATGCTGGAGATAGGCCTTCTATGTCAAGAGTTGTTTCCATGTTGGACAATGATTCAACTCTTCCTACTCCAAAACAGCCAGCATTTATTTTCAAGAAATCGAATTATGCGAGTTCAGATGCTTCAACCAGTGAAGGAATTAATTACTCAGTTAATGAGATGAGTATGACTAGGATTGAAGCTCGCTGA 2598 0.4604 MKLLSSKELLGPSFLLLLLFFSPSCHSLDSIITSNRPIKDGDVLVSDDRGTFVLGFFSPRDDSRSRYVGIWYNKISEQTVVWVANRDTPLKNNDTSGVLSVQNGNLVLHAATIKNRNVNPVWSTNVSTSFNASSAKLLDTGNLVLFNGNGNVLWQSFDYPGNTLLPFMKLGLNRTTGLNRFLRSWKSPADPGSGNVTYKIDPAGSPQLYLNKNGIPIWRVGSWTGLRWSGVPEMTPSFIFTVEFIDDKDEVTIMYGVKDPTVLTRMVLEETGHVRRLTWQAHENRWFQIWFGPKEECDGFRQCGANANCDPYNAERFECECLPGFEPRFPREWYLRDGSGGCVRKGNVSTCRSGKGFVKVERVKVPDTSKARVEEGMRLRECKEKCLGDCSCAAYTTANESSQSGCLTWHGGMEDTRTYTNGGEDLYVRVDALELARYAKKPYGALGKKWMIAVLAVAISLLLFLGTLVYWFVKARKQGMPNSSQTYRVGILNSINLFNCLMIGRKRNRKFSFRLSFEDSPNHQEFDTTQNTDLPFFDLSTIAAATDNFSNKLGQGGFGAVYKGVLSNGKEIAVKRLAKNSGQGIEEFKNEVVLISKLQHRNLVRILGCSIEGEEKMLIYEYLPNKSLDFFIFDEAKRSLLDWEKRFDIICGVARGILYLHQDSRLRIIHRDLKASNVLLDSALDPKIADFGMARIFGGDQIEANTNRVVGTYGYMSPEYAMEGQFSIKSDVYSFGVLLLEIVTGRKNSGQYEDIKTTNLVGHIWDLWREGRALEIVDPSLGESCSDHLVLRCIQIGLLCVQDHAGDRPSMSRVVSMLDNDSTLPTPKQPAFIFKKSNYASSDASTSEGINYSVNEMSMTRIEAR* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3923 865 CDD STKc_IRAK 553 820 - -
Lja4g3923 865 ProSiteProfiles EGF-like domain profile. 293 331 IPR000742 -
Lja4g3923 865 SMART ntp_6 352 430 IPR003609 -
Lja4g3923 865 Gene3D - 24 157 IPR036426 -
Lja4g3923 865 SMART blect_4 35 160 IPR001480 -
Lja4g3923 865 Pfam S-locus glycoprotein domain 218 328 IPR000858 GO:0048544
Lja4g3923 865 SUPERFAMILY Protein kinase-like (PK-like) 534 833 IPR011009 -
Lja4g3923 865 SMART serkin_6 547 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3923 865 CDD PAN_AP_plant 349 430 - -
Lja4g3923 865 Pfam D-mannose binding lectin 79 186 IPR001480 -
Lja4g3923 865 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 52 859 - -
Lja4g3923 865 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 223 IPR036426 -
Lja4g3923 865 Pfam PAN-like domain 351 415 IPR003609 -
Lja4g3923 865 Gene3D Phosphorylase Kinase; domain 1 522 622 - -
Lja4g3923 865 ProSiteProfiles Bulb-type lectin domain profile. 29 158 IPR001480 -
Lja4g3923 865 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKS1 52 859 - -
Lja4g3923 865 PIRSF SRK 2 865 IPR024171 GO:0004674
Lja4g3923 865 ProSiteProfiles Protein kinase domain profile. 547 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3923 865 ProSiteProfiles PAN/Apple domain profile. 351 431 IPR003609 -
Lja4g3923 865 ProSitePatterns Protein kinases ATP-binding region signature. 553 575 IPR017441 GO:0005524
Lja4g3923 865 Gene3D Transferase(Phosphotransferase) domain 1 623 829 - -
Lja4g3923 865 ProSitePatterns Serine/Threonine protein kinases active-site signature. 668 680 IPR008271 GO:0004672|GO:0006468
Lja4g3923 865 CDD B_lectin 35 160 IPR001480 -
Lja4g3923 865 Pfam Protein tyrosine and serine/threonine kinase 549 817 IPR001245 GO:0004672|GO:0006468
Lja4g3923 865 Pfam Domain of unknown function (DUF3403) 820 865 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3923 Lja-Chr4 71975084 71979732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3923 524 865 Receptor kinase-like Gene Family AT4G11530 58.000 6.00e-131 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja4g3923 PK_Tyr_Ser-Thr 7.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3923 - - gmx:100812814 1278.46