Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3916 ATGGCAACACCCTCACAGTACCCACCTGAGCTAGACACTGACTCAGTCGCCTCCTCCCCTCGCTCCGACTTCCATGACGCGCCGCCACGCGTCCGCTTCATGGTCAGCTTCCGCGGCAAGATCCTCCCCCGCCCCCACGACAATCAGCTCCGCTACGTCGGCGGCGACACCCGAATCGTCGCCGTCAACCGCTCTGCCTCCTTCCCCGCCCTCCTCCTCAAACTCTCTAAACTCTCAGGTATGACCAAGATAACATTGAAGTACCAACTCCCAAACGAGGAGCTCGACGCGTTGATCTCAGTAACAACGGACGAAGACGTGGAGAACATGATAGACGAGTACGACCGCGTCGCACACAATCAAAACCCACGATCGGCTCGGCTTCGGCTCTTCCTCTTCCAAGAAGGCCAAGATTCCAGAACCAACAGCATCACTTCACTTCTCAACGGTTCAGCCAACCGTGAAAACTGGTTCCTCGACGCCTTAAACGGCGGCGTTTCGGGCCTGGAACGAGGTCGCTCCGAAGCTTCTTCTATGCTTTCTGAGGTACCCGATTATCTCTTCGGGTTGGACAATTCGGAAGAAGCAAATCGTGAGCCTCGCCTGAAGGATCGACCCGTTTTCGCTGATAACGTTTCCGCTTCGGATCCGGGTTCTCCTGCCCCGATTGTCTCGTCGCCGTTCTGTTCCACGTCGTCAGTTCCCGGCGTGCCACCTGTCCCCAGCCTCCCGCCGGTGAAAACCAAACTGGAAAACCCGGTTCCTGAAAGGGAAAATCGAATCGAAGCTGAAACGGGTGGGCACCCGAGCCCGAACCCGAATATGTACCCGGGTAACACTCTCAGTCACAGTCACCCTGTAATACACTACACACCAGAAGCTGCTTATTCGGGTGCGGGTCATTCTCCACAACCGGTTCCTGTTTATTACATTTCAGCTCCGGTTCAACCAGGGACAGTGCCGGTCCAACCAGTTCCTATGCAGGCGCCTTATCCTTTTGTGCAACAGCCATATCATGCGGTGGTGCCAGCTCAGGTTCCAGTTGGGTACCATCAATATGTACCGGGTTCGGGTCAAGTTTATAGTCCGGGTGTCAGGCATGTGAGCCCGGGTCAACCATTCAGTCCCACGGCGGCGGTTCACGACGCGTTGAGGCAGCGTGTGTATCAAGCTGTGCACTCCGGTCCAGTTCCGGTTTACGCGGCGGCGGCCGTGGGTAAGGATGAACCGCAGAGAAGTGGAGCGGAGTTTGTGACGGGTCGGGGCACCATTTAA 1275 0.5671 MATPSQYPPELDTDSVASSPRSDFHDAPPRVRFMVSFRGKILPRPHDNQLRYVGGDTRIVAVNRSASFPALLLKLSKLSGMTKITLKYQLPNEELDALISVTTDEDVENMIDEYDRVAHNQNPRSARLRLFLFQEGQDSRTNSITSLLNGSANRENWFLDALNGGVSGLERGRSEASSMLSEVPDYLFGLDNSEEANREPRLKDRPVFADNVSASDPGSPAPIVSSPFCSTSSVPGVPPVPSLPPVKTKLENPVPERENRIEAETGGHPSPNPNMYPGNTLSHSHPVIHYTPEAAYSGAGHSPQPVPVYYISAPVQPGTVPVQPVPMQAPYPFVQQPYHAVVPAQVPVGYHQYVPGSGQVYSPGVRHVSPGQPFSPTAAVHDALRQRVYQAVHSGPVPVYAAAAVGKDEPQRSGAEFVTGRGTI* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3916 424 MobiDBLite consensus disorder prediction 218 236 - -
Lja4g3916 424 MobiDBLite consensus disorder prediction 197 255 - -
Lja4g3916 424 SUPERFAMILY CAD & PB1 domains 46 142 - -
Lja4g3916 424 MobiDBLite consensus disorder prediction 1 25 - -
Lja4g3916 424 MobiDBLite consensus disorder prediction 1 20 - -
Lja4g3916 424 Pfam PB1 domain 46 134 IPR000270 GO:0005515
Lja4g3916 424 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P 5 421 - -
Lja4g3916 424 SMART PB1_new 45 135 IPR000270 GO:0005515
Lja4g3916 424 Gene3D - 51 135 - -
Lja4g3916 424 PANTHER OS05G0427100 PROTEIN-RELATED 5 421 - -
Lja4g3916 424 CDD PB1_UP2 34 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3916 Lja-Chr4 71915753 71917673 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3916 25 170 MAP Kinase Kinase Kinase AT5G57610 43.537 1.79e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3916 - - aprc:113858359 594.734