Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3914 ATGGTGAAGAAATCAACGGCGGCGGTGAATGAGGAGGAGCCGGTGCCGGAGCATCTCCGGTGCGGGCGGACTGACGGGCGGCAATGGCGGTGCCGGCGGCGAGTGATGGGTGATCTGAAGCTTTGCGAGATTCACTACCTTCAAGGTCGTCATCGCCAGTACAAGGAGAAGGTCCCTGAGTCTCTGAAGCTTCAGAGGAAGCCCAGGAACAAGGACGGTGTTGCTTCTGGTTCTGGTTCTGGTTCCAGCAATGCCGAAGCTAGGGCACGGAGGGTTTGCCAAATTGCCAACAGGGTCAAGAGGAAGAAGAGGAAGCTCTCGTCGGAGGGCGGTTCTGATTCTGAGGCGGCGTTGTCTCCTGTTCGGAAGAAGAGTGGTGGTAGTGGTGGTGATATGCAGTTGGACCTGTTGAGGATGGTTCTGACTAGAGAGACTGAGAAGAGGAAGAGGAACAGCAATTCGAAGGCGGCGGCGATGAAGAAGAAGAAGAAGAAGATGATGAAGAAGAAGAAAAAGGAGGAGGAAGAAAATCAGTTCAGTGAAGGAGAATTGAGGAGAGAATTGCCTAATGGGGTGATGGAAATTTCACCAGCTTCAACAATGCCCCATGATTACAACAATGTGGGTTCACATTGTGATGTGAAAGTGGGTGTTGCTGCTCTTACACCGCGTTACTTCAGGTCCAAGAATGTTGAGAGGGTCCCTGTTGGCAGGTTGCAGGTTGCACCATACGGAACAAACTCAAACTTGAGGAACTGTAAGAGGATGAAGTGTCATTGGTGTCATGGAACTAAACCTGAGAATCTGATCAAGTGTTCGAGCTGTCAGAAGGAGTTTTTCTGCACGGATTGCATCAAAGAGCGGTGTTTTGATGCTCAAAATGAAGTAAAGAAAGAATGCCCAGTTTGTCGAGGAACTTGCACTTGTAAGGACTGCTTGGCAAGTCAATGTAATGACAGTGAAAGTAAGGAATATTTGGCTGGTAAAAGTAGAGTTGATAAAATATTGCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTGAAGCGAATAAGTGAAGATCAGGATTCTGAGATAGAAACAGAAGCAAAAGTTAAAGGGAAAAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGCGACAATGAGAAGCAGTACTGCAATCATTGCAAAACACCCATCTTGGATCTCCATAGAAGCTGCCCTACTTGTTCATATAGCCTATGCTTAAGTTGTTGTGCGGAATTAAGTCAAGGAAGAACTTCTGGAGATATTGACTCATCTATGTTCAAGCTGCCTTATAGACTGAAAACCTGTATTGCCAGCGAGAGTCATTCTTTGGATCAGAAGGCCATTTCTACTGCTACTGCAATATTGCCGGAGTGTTCAAATGGCAATGGTATTGATAGTCTATTATGCCCTCCTACAGACCATGGTGGTTGTGGTAATAGCCACCTTGATTTGAGATGTGTTTTTCCCTCTAGTTGGATCAAAGAAATTGAAGTAAAGGCAGAAGAAATTGTTTGCAGCTATGACTTCCCCGAAACATTGGATAAAAGTTCAAGCTGCTCATTATGCTTTGATACCGATCAAAATGATAACAGATATAAGCACTTGCAAAAAGCAGCTCTAAGGCAAGATTCAACGGATAATTTCTTATTCTGTCCCACAGTTACGGACATCAGCGGTGATAACTTTGAGCACTTTCAGAAACATTGGGGAAAAGGCCACCCCGTAGTAGTTCGAGATGTCCTCCGAAGTACAACAAAGCCCTACTGGAATCCTCTGATCATGTTCTGTTCTTATCTCGAGCAGAGCATTGCAAGACATGAGAATAATAAAGACCTACTTGAATCTTGTTTGGATTGGTGTGAGGTGGAAATTAACATTAGGCAATATTTTACCGGGTCTCTCAAAGGTCGTCCTCAGAGAAACACTTGCCATGAGATGCTGAAACTAAAGGGGTGGTTGTCTTCCCAAATATTCAAAGAGCAGTTTCCAGCTCATTTTGCTGAGGTAATTGATGCTCTACCAGTTCAAGAATACATGAATCCCGAGACTGGTCTTCTGAATTTGGCTGCAAATTTGTCACACGGGAGTGAGAGACATGACATCGGGCCATATGTCTATATTTCACATGGCTGTGCTGATAGAGAAGCTGATTCTGTTACAAAACTCTGCTATGACTCATATGATGTGGTTAATATTATGGCACATACCTCAGATGCCCCCATCTCTACAGAACAGCTTACGAAAATACGAAAATTACTAAAAAAGCACAAAGCTCTGTGTCAAATGGAGTCTGTTGCTACTGAGCACCTAAAAGAACTGAAAGTGGGAATGACATTATTGCATGCTGAAGAAACGGAACAGAAAGGCTCGCGGAGTATGGGAAAAGAAGGGTTAGACTTTTTCAGGAGAGTGAATAGAACATCATGCATCTCAACTGGTGCTAAAAAAGCTGCTAGCCAGAGTACAGACAGGAATATTTCCCAGGATGCAGAGTGTGATGTCTCTTCTGATTCTGATTCTGATACTGATTCTGACCCCTCTTTATTTCTCAAGGGGACTGTTCAAACCACTGAATTGTCTACACATGATTATCCTAGAAATCCCTCTGAAAGCTCATACAGTGATAAAAATAGACTTACTAAACCTTCAGGTGCCCAATGGGATGTCTTTCGTAGAGAAGATGTACCAAAGCTCATTGAATACCTTAAAAGGCACTATGATGAATTTTCTTATATCCATGACTATGACAAGAAAATCGTTCATCCAATTCTTGATCAGAGCATTTTTCTTGACAGTACCCACAAAATGAGACTTAAGGAGGAGTTCAAGATCGAACCATGGACTTTTCAGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGTTGTCCATACCAGATCAGGAATCCTAAGAGTTGTGTTCATGTGGTAATGGAATTTGTGTCCCCTGAAAATATTACCGAGTGTATCCAGTTGATTGATGAGGTCCGGCTGTTACCTGAAGACCATAAATCAAAAGTAGACAAGCTGGAGGTGAAGAAAATGGCCCTTCAGAGCATGAGTTCAGCAATTAAGGAAATACGCCAACTTACATGTAAAACATGA 3123 0.4329 MVKKSTAAVNEEEPVPEHLRCGRTDGRQWRCRRRVMGDLKLCEIHYLQGRHRQYKEKVPESLKLQRKPRNKDGVASGSGSGSSNAEARARRVCQIANRVKRKKRKLSSEGGSDSEAALSPVRKKSGGSGGDMQLDLLRMVLTRETEKRKRNSNSKAAAMKKKKKKMMKKKKKEEEENQFSEGELRRELPNGVMEISPASTMPHDYNNVGSHCDVKVGVAALTPRYFRSKNVERVPVGRLQVAPYGTNSNLRNCKRMKCHWCHGTKPENLIKCSSCQKEFFCTDCIKERCFDAQNEVKKECPVCRGTCTCKDCLASQCNDSESKEYLAGKSRVDKILHFHYLICMLLPVLKRISEDQDSEIETEAKVKGKNISDIQIKQVEFGDNEKQYCNHCKTPILDLHRSCPTCSYSLCLSCCAELSQGRTSGDIDSSMFKLPYRLKTCIASESHSLDQKAISTATAILPECSNGNGIDSLLCPPTDHGGCGNSHLDLRCVFPSSWIKEIEVKAEEIVCSYDFPETLDKSSSCSLCFDTDQNDNRYKHLQKAALRQDSTDNFLFCPTVTDISGDNFEHFQKHWGKGHPVVVRDVLRSTTKPYWNPLIMFCSYLEQSIARHENNKDLLESCLDWCEVEINIRQYFTGSLKGRPQRNTCHEMLKLKGWLSSQIFKEQFPAHFAEVIDALPVQEYMNPETGLLNLAANLSHGSERHDIGPYVYISHGCADREADSVTKLCYDSYDVVNIMAHTSDAPISTEQLTKIRKLLKKHKALCQMESVATEHLKELKVGMTLLHAEETEQKGSRSMGKEGLDFFRRVNRTSCISTGAKKAASQSTDRNISQDAECDVSSDSDSDTDSDPSLFLKGTVQTTELSTHDYPRNPSESSYSDKNRLTKPSGAQWDVFRREDVPKLIEYLKRHYDEFSYIHDYDKKIVHPILDQSIFLDSTHKMRLKEEFKIEPWTFQQHVGEAVIIPAGCPYQIRNPKSCVHVVMEFVSPENITECIQLIDEVRLLPEDHKSKVDKLEVKKMALQSMSSAIKEIRQLTCKT* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3914 1040 MobiDBLite consensus disorder prediction 818 887 - -
Lja4g3914 1040 MobiDBLite consensus disorder prediction 169 183 - -
Lja4g3914 1040 MobiDBLite consensus disorder prediction 53 183 - -
Lja4g3914 1040 Pfam WRC 16 57 IPR014977 -
Lja4g3914 1040 ProSiteProfiles JmjC domain profile. 687 1003 IPR003347 -
Lja4g3914 1040 SUPERFAMILY Clavaminate synthase-like 560 1028 - -
Lja4g3914 1040 MobiDBLite consensus disorder prediction 847 887 - -
Lja4g3914 1040 ProSiteProfiles WRC domain profile. 15 61 IPR014977 -
Lja4g3914 1040 Gene3D Cupin 558 1012 - -
Lja4g3914 1040 MobiDBLite consensus disorder prediction 53 70 - -
Lja4g3914 1040 SMART cupin_9 668 1003 IPR003347 -
Lja4g3914 1040 PANTHER PROTEIN B160 10 1039 - -
Lja4g3914 1040 MobiDBLite consensus disorder prediction 818 839 - -
Lja4g3914 1040 ProSiteProfiles Zinc finger RING-type profile. 258 304 IPR001841 -
Lja4g3914 1040 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 10 1039 IPR045109 GO:0032454|GO:0033169
Lja4g3914 1040 MobiDBLite consensus disorder prediction 1 21 - -
Lja4g3914 1040 Coils Coil 156 183 - -
Lja4g3914 1040 MobiDBLite consensus disorder prediction 154 168 - -
Lja4g3914 1040 Pfam JmjC domain, hydroxylase 889 986 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3914 Lja-Chr4 71890223 71896166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3914 16 98 GRF Transcription Factor Family AT4G37740 34.831 6.15e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja4g3914 JmjC 3.2e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3914 K15601 - gmx:100810673 1481.85