Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3910 ATGGATCAATGGCTGGGAATAATCGAGAGGACTGCTACTTGCTTGTTTAGCTGCGCCAACAAGCGTGCGTCCTATGTTTATAAGTTGGAAGAGAATGTGGAGTCATTGAGAGGGAAATGGAATCAACTTCAACAGATGTTCAATGATATCAATATCAGGATTCAGACTGCTGAATACACGGGAGAGATGCAAAGGAAAAATGAAGTGGAGGGTTGGCTGCAGGATGTTGGCAATCTTCAAAAGGATATAAAGGATGTTCTGGATTCTCAAGAAATTCGTGAGAATAAATGTTTAAGAGGTTATTGCTCGAAGAATTGTGTTTTCAGCTACAAGGTTGGAAAGAAAATTGTTAAGAATATGATTCCCAATGCGGATGAGCTGTTGTATAAAGGAAAACATTTTGGTAGTATTGACATTGCTAACAAGTTACCACCAAAGCCAGTAAATGAAATGCAAAATGTTGAGACCGTTGGTTTGGATTTGATACTCAATGAAGTTTGGAATAGTATTGGAGATGAAAATATCAATATCATTGGTTTATATGGAATGGCAGGTGTTGGAAAAACTACCCTTCTAAGAAGAATTCACAATGAGTTTGGAAAGAGGAAGCATGACTTCACTCTAGTGTTGTGGGTGGTGGTGTCTAAAGATTGTGATACTAATAGAATTATGAATGATATCCGAAACAGGATTGGGATTGATGATGATGCTCGGTGGGAAAATAGTAACAAAGAACAAAGAGAGGCAAAGATTTATCAAGTCTTGAAACAAAAGAAGTTTGTGCTGATGATAGATGATCTTTGGGATGAGTTGAAACTAGAAACTGTGGGAGTTCCAAATCTAAAGGAAACTAATAATAAATCAAAAGTATTGTTCACAACACGAATTAAGAATATTTGTGCCAAAATGCAAGCTCAGAGGAAATTCGAAGTGAGGTGTTTATTAAAGAAAGAATCATTTGATTTGTTTTGTCGAAAAGTAGGTGATGAGACTTTAAAGAGTCACACAGAAATTCCAAAGTTAGCATGGGAGATGACTAAAGAATGTGCAGGATTGCCACTGGCACTTACTACAGTAGGAGGTGCCATGGCTGGAGTGAAAAACATAAATGCATGGAAGCAAGCCAAATATGATTTAAGGAGATCTGCTTGGACAGCGTCAGAATGGGAGAATAAAGTTTTCAATATCATTATGTTTAGCTTTGATAGATTGCCAGATGATGCCCATAAAAAATGCTTCTTGTATTGTGCTCTATACCCAGAAGATCATGAAATTAACAATGACGATCTTATTCTTCGATGGATTGGAGAGGGGTTTCTTGGTGAAGATATGAGTAAGAAAAGTACATATCATATGTATGAGCAAGGAGAATCTATCATTGAGAAGTTAAAGCTCTCATGTTTGTTAGAGGAGGGTGGTGTTGAATTTGTCTTCGCAACAGAATATTGGAGGCGGGTTAAGATGCATGATGTGATTCGAGATATGGCATTATGGATATCCCGTGATAGAGATCAAAATAAAGACAAAGTTCTAGTTCAAGAAGAAGCATTAGCATTGTCAGAAATCGATTCTGAAAGGTTGAATCTTGTGGAGAAGATTTCAATTATATCTAGTTCATATACAAAGTTCAAAGTACGAGCTTGTCCAAATCTTATCACTCTATGCTTAGGGCGTTGGGTGTTTATTACTGACTATTCAAATATTACGTTTATGAAAAGATTAAAAGTATTGGATCTATCACATAGTTGCATAAATTTTCTCCCCAGTATGAGACGTAGGTTGCCTGTTGAATTGAAGAGTTTGAAAAACTTGAGGGTGTTCGTTATGGAATCTTTACGCCTCTTCAGATCTGATTTCATCATTCCTTCAGAAGTGATAGAAAGTCTTGAGCAGTTAAAGGTGTTCAGATTTTCTTCAAAAATATTTTGGCCACAATTAATGTTCTTTCCCAACCTTAAGGGAGTGAAAAAACTCCTAGAGAAGTTGGAATCCTTGCCAAAATTGGAGGAATTGCACATCCCAGTTAAAACCATCACCACCATGCATAAATTACTCGAGTCGAACAAGTTACGAGATTGCACAAGATATTTTAAGTTGGATAGAATATATGAGGAGGCAATTGAAATGCCATCACTACTAACAACTTTCTCAGGAATGAAGAATCTCGAGAATATAACTTTCAACTATGTTTATAATATAATAGAAGGAAGTTTGTCAATTACTAACCCTTGTTATCTTTGCAAGCTTCGCCGAGTTGAGATTCATGGTTGTAGTTCAATAACTCATTTGACATGGTTGGTGTATGCTCCACTCCTTGAGTTCCTTGGTGTTTCCAACTGTCTTTCAATTAAAGAAGTGGTCAGGGAAGTCGAAGATGAAGCTGATGTATTCCCAAATCTCAAATTGATCTCCCTTCGGACTTTAGTAGCGTTGGAGAGCATCCATAGCAAAGCATTAGATTTCCCCTCCCTGAAAATTATTGATGTATATTCTTGCTACAATCTAAGGAAGCTTCCATTGAATTCCAATTCTTCTGGCAAGGACAGTTTGGTTAAAATTCGAGGAGGCATCAAGTGGTGGAACAATTTAGTGTAG 2595 0.3696 MDQWLGIIERTATCLFSCANKRASYVYKLEENVESLRGKWNQLQQMFNDINIRIQTAEYTGEMQRKNEVEGWLQDVGNLQKDIKDVLDSQEIRENKCLRGYCSKNCVFSYKVGKKIVKNMIPNADELLYKGKHFGSIDIANKLPPKPVNEMQNVETVGLDLILNEVWNSIGDENINIIGLYGMAGVGKTTLLRRIHNEFGKRKHDFTLVLWVVVSKDCDTNRIMNDIRNRIGIDDDARWENSNKEQREAKIYQVLKQKKFVLMIDDLWDELKLETVGVPNLKETNNKSKVLFTTRIKNICAKMQAQRKFEVRCLLKKESFDLFCRKVGDETLKSHTEIPKLAWEMTKECAGLPLALTTVGGAMAGVKNINAWKQAKYDLRRSAWTASEWENKVFNIIMFSFDRLPDDAHKKCFLYCALYPEDHEINNDDLILRWIGEGFLGEDMSKKSTYHMYEQGESIIEKLKLSCLLEEGGVEFVFATEYWRRVKMHDVIRDMALWISRDRDQNKDKVLVQEEALALSEIDSERLNLVEKISIISSSYTKFKVRACPNLITLCLGRWVFITDYSNITFMKRLKVLDLSHSCINFLPSMRRRLPVELKSLKNLRVFVMESLRLFRSDFIIPSEVIESLEQLKVFRFSSKIFWPQLMFFPNLKGVKKLLEKLESLPKLEELHIPVKTITTMHKLLESNKLRDCTRYFKLDRIYEEAIEMPSLLTTFSGMKNLENITFNYVYNIIEGSLSITNPCYLCKLRRVEIHGCSSITHLTWLVYAPLLEFLGVSNCLSIKEVVREVEDEADVFPNLKLISLRTLVALESIHSKALDFPSLKIIDVYSCYNLRKLPLNSNSSGKDSLVKIRGGIKWWNNLV* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3910 864 Gene3D Ribonuclease Inhibitor 512 656 IPR032675 -
Lja4g3910 864 PANTHER DISEASE RESISTANCE PROTEIN RP 15 860 IPR044974 GO:0006952
Lja4g3910 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 416 IPR027417 -
Lja4g3910 864 PRINTS Disease resistance protein signature 254 268 - -
Lja4g3910 864 PRINTS Disease resistance protein signature 349 363 - -
Lja4g3910 864 PRINTS Disease resistance protein signature 569 585 - -
Lja4g3910 864 PRINTS Disease resistance protein signature 177 192 - -
Lja4g3910 864 SUPERFAMILY L domain-like 487 840 - -
Lja4g3910 864 Pfam NB-ARC domain 163 402 IPR002182 GO:0043531
Lja4g3910 864 Gene3D Ribonuclease Inhibitor 657 852 IPR032675 -
Lja4g3910 864 Gene3D - 139 312 IPR027417 -
Lja4g3910 864 CDD AAA 157 267 - -
Lja4g3910 864 Gene3D - 401 497 IPR036388 -
Lja4g3910 864 SMART AAA_5 174 319 IPR003593 -
Lja4g3910 864 PANTHER OS12G0491200 PROTEIN 15 860 - -
Lja4g3910 864 Gene3D - 313 400 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3910 Lja-Chr4 71859278 71864609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3910 154 835 WRKY Transcription Factor Family AT5G45050 21.032 2.73e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3910 - K13459 mtr:MTR_4g091380 824.313