Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3907 ATGGGTGGTGAGGACTTCGCCGGAGAATCCAGAACGGCGGCGGAGCTACCTACGGGAGCTTCAATCCTCCGGCGAGCTGTGGTACTCATCTGTTCCGTCCTCTCTCTCTCACACTCGATCAGGGTCTTCGCCGGAAAATGGCAAGTCATCCGGAGCAAGCTGGAGGAGCTTCAATCCGGTCTAATCGCCGCCGAGAATTGCGATTCCGGTGAGAATCCTTCTCTTTCCCGGTTGGTTCCTTCCATTGTGGCCACCGTTTTGGAGTGCCACGATCTGGGTCAGCGTTGCATCGATGTTTCATACAGTGGGAAGCTTCTGATGCAGAGTGATTTGGACGTGGCGTTCGCGAAGCTCGATGGGTTGACGAAGAAGCTCGCGGAGATTTACAGGACGGGGATTTTGACAAATGGGTATGCGCTCGTTGTGTCGAAACCGTGTCTTGGAGCTTCCAAAGAGGACATGAGATTCTACGTGAGGGACTTGTTGACGAGGATGAAGATTGGGGATTTGGGTATGAAGAAACAGGCTTTGAGGAATCTTCTTGAGGTTGTGGTGGAGGATGAGAAGTTTGTGAAGGTGATTGTGGATGTGGGGGATGTTGTTCATTTGCTGGTGGGTTTTCTTGGTTCATTGGAGGAGGAAATCCAAGAAGAGAGTGCTAAGGTGGTTGCTGTGGTTGCAGGGTTTGATTCCTATAAAGGGGTTTTGGTTGGTGCTGGTGTTATTGCGCCTCTGATTCGGGTTTTGGATTGTGGGAGTGAGTTAGGGAAGGTTGCGTCTGCAAGGTGTTTGATGAAGTTAACTGAGAATTCGGACAATGCTTGGTGTGTTTCTGCTCAAGGAGGTGTCACTGCCTTGTTGAATATTTGTGGAGATGCAGATTCTAAAGGGGATTTGGTTGGTCCTGCTTGTGGGGTGTTGAGAAATCTTCTTGGTGTTGAGGAAATTAAGAGGTTTATGATTGAGGAGGGTGTTGTTTCCACGTTTATCAGGCTTGTGAAATCAAAGGAGGAAGCAATTCAGGTGAATTCCATAGCATTCATTCAGAGTATTTCCTCTGGAGATGAGTTGGTTAGACAGATGGTGGTTAGAGAAGGTGGAATTCGAGCTTTGTTACGTCTTTTGGATCCTAAATGGTCGAATTCTTCGAAAACCAGGGAGATTGCAATGAGGGCTGTTGAGAATTTGTGTTTTTCATCATCTAGCTCTGTGAGTATTTTGATTAGTTATGGCTTTGTGGATCAGCTGCTATATTATCTTCGAAATGGTGAGGTTTCGATTCTAGAGTTGGCTCTGAAAGTGGCGTTTAGCTTGAGTGGAACATCAGAGGAAGCTAAGAAAGCAATGGGTGATGCAGGTTTCATGTCAGAGCTTGTTAAGTTTCTGAATGCAAAATCATTTGAAGTTCGTGAGATGGCAGCAGAGGCACTCTCTGCAATTGTTATGGTACCTAGAAATAGGAAGAGATTTGTGCAGGATGACCATAACATAGCCCTCCTTTTGCAATTGCTTGATCCCAATGAGGGAAATTCAGGTAACAAAAAGTTCTTGATCTCTATCTTGATGTCATTGACAAACTGCAACAGTGGTAGGAAAAAGATTGTAAGTTCTGGATATGCCAAAAACATAGACAAACTTGCTGAGGCTGAAGGTTCATCTGATGCCAAGAGACTTGTGAAGAAGCTATCTACAAACCGGTTCCGCAGTATGTTGAATGGAATCTGGCACTCATGA 1734 0.4596 MGGEDFAGESRTAAELPTGASILRRAVVLICSVLSLSHSIRVFAGKWQVIRSKLEELQSGLIAAENCDSGENPSLSRLVPSIVATVLECHDLGQRCIDVSYSGKLLMQSDLDVAFAKLDGLTKKLAEIYRTGILTNGYALVVSKPCLGASKEDMRFYVRDLLTRMKIGDLGMKKQALRNLLEVVVEDEKFVKVIVDVGDVVHLLVGFLGSLEEEIQEESAKVVAVVAGFDSYKGVLVGAGVIAPLIRVLDCGSELGKVASARCLMKLTENSDNAWCVSAQGGVTALLNICGDADSKGDLVGPACGVLRNLLGVEEIKRFMIEEGVVSTFIRLVKSKEEAIQVNSIAFIQSISSGDELVRQMVVREGGIRALLRLLDPKWSNSSKTREIAMRAVENLCFSSSSSVSILISYGFVDQLLYYLRNGEVSILELALKVAFSLSGTSEEAKKAMGDAGFMSELVKFLNAKSFEVREMAAEALSAIVMVPRNRKRFVQDDHNIALLLQLLDPNEGNSGNKKFLISILMSLTNCNSGRKKIVSSGYAKNIDKLAEAEGSSDAKRLVKKLSTNRFRSMLNGIWHS* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3907 577 Pfam Armadillo/beta-catenin-like repeat 358 397 IPR000225 GO:0005515
Lja4g3907 577 SUPERFAMILY ARM repeat 153 548 IPR016024 -
Lja4g3907 577 Gene3D - 157 566 IPR011989 -
Lja4g3907 577 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 12 577 - -
Lja4g3907 577 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 281 325 IPR000225 GO:0005515
Lja4g3907 577 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 12 577 - -
Lja4g3907 577 SMART arm_5 313 353 IPR000225 GO:0005515
Lja4g3907 577 SMART arm_5 270 312 IPR000225 GO:0005515
Lja4g3907 577 SMART arm_5 187 228 IPR000225 GO:0005515
Lja4g3907 577 SMART arm_5 229 269 IPR000225 GO:0005515
Lja4g3907 577 SMART arm_5 355 398 IPR000225 GO:0005515
Lja4g3907 577 SMART arm_5 442 482 IPR000225 GO:0005515
Lja4g3907 577 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 366 411 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3907 Lja-Chr4 71796188 71798624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3907 204 448 U-box Gene Family AT3G54790 25.610 1.59e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3907 - - gmx:100809382 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3907 4 71796188 71798624 Lja6g3140 6 60011597 60013654 PCT