Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3905 ATGCGGAATTTCACTTTCTTCGAACAAGCTTTCCGTGACCATCGCTCACAGTTGAAGCTCGTTCTCTTCTGCACCACCGTCAGTGGTGGTGGACTTTTGGCATACGGTGAGGCTGTTGCTGCATCTGAACCGGAGCAGAAGAAGAAGAAGGTCGTGGTGCTGGGAACTGGCTGGGCAGGGACGACTTTCTTGAGGAATTTGAACAATCCAAGATATGAGGTTCATGTGGTGTCGCCTCGCAACTATTTTGCCTTCACTCCTTTGCTGCCAAGCGTTACCTGTGGAACTGTGGAAGCGAGAAGCATTGTTGAACCCGTCCGCAACATCTTTAGGAAGAAAAAGGTGAACGCTTATTTCAATGAAGCAGAGTGTGTCAAGATTGACGCAGCAAACAAGAAAATTTACTGTCGATCTAATATAAACAATAACTTGAACGTTAAAGACGAATTTGTCGTGGACTATGACTACCTAGTCATAGCTGTGGGAGCAAATGTCAACACATTTAACACTCCCGGGGTGGTGGAGAATTGCCATTTCTTGAAGGAAGTTGAAGATGCACAGAGGATTAGAAGAACTGTTATTGACTGCTTTGAAAGAGCAAGTTTGCCGAGTATAAGTGAAGAAGAAAGGAAGAGAATTCTTCATTTCGCTATTGTTGGAGGTGGTCCAACTGGAGTGGAGTTTGCAGCCTCGCTCCATGACTTTGTCAATGAGGATTTGGTCAAGTTATATCCTAAGGCAAAAGATTTAGTCAAAATTACGCTTCTGGAGGCTGGAGATCATATTTTGAGCATGTTTGACAAAAGAATCACTGCTTTTGCTGAAGACAAGTTCCGAAGAGATGGTATTGATGTGAAAACCGGATCCATGGTTGTGAAGGTATCTGATAAAGAAATTTCTACTAAAGAAATGAAAAATGGAGGGGAAATTACTTCAATTCCATATGGAATGGCCGTCTGGTCAACTGGTATCGGAACTCGTCCATTTATAAGAGATTTTATGCAACAAATTGGTCAGATTAACAGACGTGCGGTAGCTACTGATGAATGGTTGAGAGTTGAGGGAACCGACAACGTATATGCACTTGGTGATTGTGCTACAATAAACCAGAGAAAAGTCATGGAAGATATTGCGGCAATATTTAAGAAGGCTGACGCAGACAATTCAGGAACCCTTACAGTCAAAGAACTGCAAGAGGTGTTGCATGACATCTGTGAAAGATACCCTCAGGTGGAGCTATATCTGAAAAGTAAACAGATGAACAATGTTGCTGATCTGTTGAAGGAATCCAAAGGAGATGTTAAAAAGGAATCCATTGAACTGCATATCGAAGAACTAAAAACCGCACTTTCTAATGTGGACTCCCAGATGAAATTTCTTCCTGCTACAGCGCAGGTTGCATCTCAGCAAGGCACCTACCTTGCCAAGTGTTTTGACAGGATGGAAGAGTGTGAAATAAATCCAGAGGGTCCTCTCAGGTTCAGGGGAGAAGGGCGCCATCGGTTCAAACCCTTTAGGTACAAGCATTTAGGCCAATTTGCTCCTCTGGGAGGAGAGCAGGCAGCTGCACAGCTTCCTGGGGATTGGGTTTCAATTGGACACAGCACTCAATGGCTGTGGTATTCTATCTATGCAAGCAAGCAAGTCAGCTGGCGTACAAGAGCATTGGTAGTAACAGACTGGACAAGACGCTTTCTTTTCGGGAGGGACTCAAGTCAAATATGA 1725 0.4388 MRNFTFFEQAFRDHRSQLKLVLFCTTVSGGGLLAYGEAVAASEPEQKKKKVVVLGTGWAGTTFLRNLNNPRYEVHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFRKKKVNAYFNEAECVKIDAANKKIYCRSNINNNLNVKDEFVVDYDYLVIAVGANVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPSISEEERKRILHFAIVGGGPTGVEFAASLHDFVNEDLVKLYPKAKDLVKITLLEAGDHILSMFDKRITAFAEDKFRRDGIDVKTGSMVVKVSDKEISTKEMKNGGEITSIPYGMAVWSTGIGTRPFIRDFMQQIGQINRRAVATDEWLRVEGTDNVYALGDCATINQRKVMEDIAAIFKKADADNSGTLTVKELQEVLHDICERYPQVELYLKSKQMNNVADLLKESKGDVKKESIELHIEELKTALSNVDSQMKFLPATAQVASQQGTYLAKCFDRMEECEINPEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEQAAAQLPGDWVSIGHSTQWLWYSIYASKQVSWRTRALVVTDWTRRFLFGRDSSQI* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3905 574 Gene3D - 39 401 - -
Lja4g3905 574 Gene3D - 417 573 - -
Lja4g3905 574 SUPERFAMILY FAD/NAD(P)-binding domain 209 369 IPR036188 -
Lja4g3905 574 SUPERFAMILY FAD/NAD(P)-binding domain 48 267 IPR036188 -
Lja4g3905 574 SUPERFAMILY EF-hand 365 459 IPR011992 -
Lja4g3905 574 SMART efh_1 376 404 IPR002048 GO:0005509
Lja4g3905 574 ProSitePatterns EF-hand calcium-binding domain. 385 397 IPR018247 -
Lja4g3905 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 25 44 - -
Lja4g3905 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 154 172 - -
Lja4g3905 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 215 233 - -
Lja4g3905 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 344 366 - -
Lja4g3905 574 PANTHER NADH DEHYDROGENASE 5 574 IPR045024 GO:0003954|GO:0006116
Lja4g3905 574 Pfam Pyridine nucleotide-disulphide oxidoreductase 49 374 IPR023753 GO:0016491
Lja4g3905 574 ProSiteProfiles EF-hand calcium-binding domain profile. 372 407 IPR002048 GO:0005509
Lja4g3905 574 PANTHER NAD(P)H DEHYDROGENASE B2 5 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3905 Lja-Chr4 71733998 71739881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3905 1 574 EF-hand Containing Proteins AT4G05020 69.984 0.0 869
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3905 K03885 - gmx:100809915 1019.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3905 4 71733998 71739881 Lja6g3139 6 59998041 60004105 PCT