Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3891 ATGAATGACCTGTTCTCAAGTTCCTTCAAGAAATACAGTGACTTGAAGCAGCAGGCCTACCTTGATGATGTGGAGGCCGGGAAGGAGAGTGTCAATCTAGACAAATTCTTTGAAGATGTGGAGAGTGTTAAGGAAGACATGAGAACGATTGAGAAGCTCTACAGAAAACTGCAAGAATCCAATGAAGAGAGCAAGATTGTGCACAATGCTAAAACCATGAAAGAGCTCCGAGCCCGGATGGACAACGACGTGTCGCAGGTCCTCAAACGCGTCAAGATCATCAAAGGCAAGCTCGAAGCCTTGGAGCGTTCCAACGCGGCAAACAGAAACGTCCCAGGGTGTGGTCCTGGTTCATCAGCAGACAGAACCAGGACCTCAGTGGTTAGTGGATTGGGGAAGAAACTCAAGGACATGATGGATGATTTTCAAGGTTTGAGAGCGAGAATGCAGCTCGAGTACAAGGAAACCGTGGAACGCCGGTATTTCACAATCACAGGAGAGAAAGCAGATGAAGATACCATAGAGAATTTGATATCAAGTGGAGAAAGTGAAAGCTTCCTGCAGAGAGCAATTCAGGAACAAGGGAGGGGCCAGATTATGGACACCATTTCAGAAATTCAAGAAAGGCATGATGCTGTTAAGGAAATAGAGAAGAACTTGCTTGAATTGCATCAAGTGTTTTTGGACATGGCAGCATTAGTGGAGTCTCAGGGTCAGCAACTTAATAACATAGAGTCTCATGTTGCACATGCTAGCTCTTTTGTTAGGAGAGGCACAGATCAGCTTCAGGAAGCAAGAGAGTACCAAAAGAGTTCTAGGAAGTGGTATTGCTATGCCGTTATTCTTGTCATTGTTCTTGTCATTGTGCTCCTGTTTCCTCTCTTGTCATCACTTCTACCTCATTTGTTGATGAGATGA 918 0.4499 MNDLFSSSFKKYSDLKQQAYLDDVEAGKESVNLDKFFEDVESVKEDMRTIEKLYRKLQESNEESKIVHNAKTMKELRARMDNDVSQVLKRVKIIKGKLEALERSNAANRNVPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRARMQLEYKETVERRYFTITGEKADEDTIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTDQLQEAREYQKSSRKWYCYAVILVIVLVIVLLFPLLSSLLPHLLMR* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3891 305 SMART tSNARE_6 198 265 IPR000727 -
Lja4g3891 305 CDD SNARE_syntaxin1-like 202 264 - -
Lja4g3891 305 Pfam SNARE domain 240 291 IPR000727 -
Lja4g3891 305 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Lja4g3891 305 SMART SynN_4 28 154 IPR006011 GO:0016020
Lja4g3891 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Lja4g3891 305 CDD SynN 33 190 IPR006011 GO:0016020
Lja4g3891 305 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lja4g3891 305 Gene3D - 194 294 - -
Lja4g3891 305 Coils Coil 40 63 - -
Lja4g3891 305 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Lja4g3891 305 PANTHER SYNTAXIN-124-RELATED 6 295 - -
Lja4g3891 305 Gene3D - 30 162 - -
Lja4g3891 305 PANTHER SYNTAXIN 6 295 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3891 Lja-Chr4 71592504 71593421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3891 1 304 SNARE and Associated Proteins AT1G61290 79.276 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3891 K08486 - gmx:100818999 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3891 4 71592504 71593421 Lja6g3129 6 59937506 59938420 PCT