Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3887 ATGGGGTACTCATGGCCTCTTGTCGTGACAACTTTAACCATTGTCCTGACTATTTCACACACAACATCAAAATCACCCGGTGAAAAATTTCTTAGTTGTCTTTCTCACTATTCAAAAAATTCAAACATTCCAGTCTTTAAAGCCACTGACACTCCACACAACACCTCATTCTTATCCATCTTGAATGCGCGCATTCAGAATAACAGATTCAAAACAGCAACAACACTGAAACCTCTAGCCATTATAACTGCCCTGCAGGAAAATCATGTCCAGGCAACGATTTCATGTGCCAAGTCTAACGACATTCAAATTAGGATCCGAAGTGGTGGCCATGACTATGAAGGCCTTTCATATGTATCAGATGTAACGTTTGTTATCCTTGACATGTTTCATTTCAATGCAGTTGATGTGAACATAGAAGACGAGACAGCATGGGTTCAAGCTGGTGCAACACTTGGCAAACTTTACTATAACATTGCAAAGAAAAGCAGGGTGCATGCTTTCCCAGCTGGGGTATGCTCTACTATGGGTGTTGGTGGTCACTTTTCGGGTGGTGGGTATGGAAATTTGATGAGAAAATATGGTCTTTCTGTGGATAATATCATTGATGCAAAACTTGTTGATGTCAATGGTCAAATTCTTGACAGAAAGTCCATGGGAGAAGATCTATTTTGGGCTATTAGAGGAGGTGGTGGGGCCAGTTTTGGGGTCATTCTGACTTTAGAAGAAGGTGCAACAGATGTTGTCTACAAATGGCAACAAGTTGCAACAAAATTTCCTGAAGATCTTTTCATAAGGGCTACGCATGAAGTGGTGGATGGAAAGGTGGGTAAAAAGACAGTGCGAGTTTCTTTCATTGGTCAATTCTTAGGGCCAATTGAAAGGCTTTTGCCTTTGGTGGATGGGGCTTTCCCTGAACTGGGTTTGAAGAAAAGTGATTGCATCTTAATGCCTTGGGTGAATTCCATTATTTTCTGGGAGAGGAATCCAATTGGAACCCCCGTTGAAAGTTTGTTGGATGTACCCAAAGAGCTTTCTACAGGCTACTATAAAAGTAAGTCAGACTATGTGAAAAAACCAATTCCAAAGGAAGCTATGCAATCCATGTGGGCTTGGATGATTAAAGGTGTGAATATAAGGATGGAATGGAATCCTTATGGTGGAAAGATGGAGAAAATTTTACCATATGAAACCCCTTTTCCTCACAGAGCAGGGAACTTGTTCAAGATTCAGTCATTTTATGAATTCATGACCCCATATGTTTCAAATTCTCCACGTGAGGCATTCCTCAATTATAGGGATATTGATATTGGAGCCAATCATCCAAGTAACGTAACAAGCTTTGACACAGCTCAAGTTTACGGAAGCAAATTTTTCAAAGATAATTTTGAGAGATTAGTGAGAGTGAAAACCAGGGTTGATCCTGAGAATTTCTTTAGATATGAACAAAGTATACCACCTAAGTCCCCGTGA 1473 0.4039 MGYSWPLVVTTLTIVLTISHTTSKSPGEKFLSCLSHYSKNSNIPVFKATDTPHNTSFLSILNARIQNNRFKTATTLKPLAIITALQENHVQATISCAKSNDIQIRIRSGGHDYEGLSYVSDVTFVILDMFHFNAVDVNIEDETAWVQAGATLGKLYYNIAKKSRVHAFPAGVCSTMGVGGHFSGGGYGNLMRKYGLSVDNIIDAKLVDVNGQILDRKSMGEDLFWAIRGGGGASFGVILTLEEGATDVVYKWQQVATKFPEDLFIRATHEVVDGKVGKKTVRVSFIGQFLGPIERLLPLVDGAFPELGLKKSDCILMPWVNSIIFWERNPIGTPVESLLDVPKELSTGYYKSKSDYVKKPIPKEAMQSMWAWMIKGVNIRMEWNPYGGKMEKILPYETPFPHRAGNLFKIQSFYEFMTPYVSNSPREAFLNYRDIDIGANHPSNVTSFDTAQVYGSKFFKDNFERLVRVKTRVDPENFFRYEQSIPPKSP* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3887 490 Pfam Berberine and berberine like 428 486 IPR012951 GO:0016491|GO:0050660
Lja4g3887 490 Gene3D - 412 424 - -
Lja4g3887 490 SUPERFAMILY FAD-binding/transporter-associated domain-like 20 240 IPR036318 GO:0050660
Lja4g3887 490 Pfam FAD binding domain 78 214 IPR006094 GO:0050660
Lja4g3887 490 Gene3D - 242 411 - -
Lja4g3887 490 PANTHER BERBERINE BRIDGE ENZYME-LIKE 17 411 487 - -
Lja4g3887 490 PANTHER BERBERINE BRIDGE ENZYME-LIKE 17 9 411 - -
Lja4g3887 490 ProSiteProfiles PCMH-type FAD-binding domain profile. 74 248 IPR016166 GO:0071949
Lja4g3887 490 PANTHER OS08G0158400 PROTEIN 411 487 - -
Lja4g3887 490 PANTHER OS08G0158400 PROTEIN 9 411 - -
Lja4g3887 490 Gene3D - 24 132 IPR016167 -
Lja4g3887 490 Gene3D - 425 487 IPR016169 -
Lja4g3887 490 Gene3D - 318 344 IPR016169 -
Lja4g3887 490 Gene3D - 137 240 IPR016169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3887 Lja-Chr4 71546316 71547905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3887 7 486 Miscellaneous Gene Families AT1G30730 45.507 3.41e-154 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3887 - - gmx:100807459 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3887 4 71546316 71547905 Lja4g3887 4 71546316 71547905 ECH
Lja6g2455 6 53455031 53462602 Lja4g3887 4 71546316 71547905 ECH