Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3878 ATGGCAGCATTGTGCAACCGAGTTAGATCGGGGATCGCTCTCTCCAACAAATTAGGGTTCCTCACTTCCCACAGATCCTCCACCCTTGTTGCCCCTCTGGCCTCCAGAAATTATTCCACCCATGTGCCAGGGCAAAAGGATACCAAAATTAAGGTTCCTTTGGCAATGTTTGGAGGTTCAGGAAACTATGCCTCTGCTTTGTATATTGCAGCAGTGAAAGCTAAAGCAGTGGAGAAGGTTGACTCTGAGCTTCATCAATTTGTTGAGGCGGTAAAGAACAGTTCCCTAGTTTCACAGTTTGTAAAGGACATATCTGTGGCTAAGGATGTTAGAGTCAAGGCCATCGAGGAGATTTCTCGTGAAGCTAAGTTTGCAGAGGTTACAAAGAATTTCCTTGTTGTTGTCGCTGAGAATGGGAGGCTTAAAAACATAGACACCATTGCAAAGAGGTTTGGTGAGTTGGCAATGGCATATAAGGGAGAAGTGAAAGCGACTGTGACCACTGTCTTTCCTCTCCCCCCTGAAGAGGAGAAGGCACTGAAGGAGACTGTTCAGGAAATCATAGGTTCTGGGGCTAAGGTTTCACTTGAACAGAAGATTGATCCAAGCATCCTTGGTGGCCTGGTGCTGGAATTTAGCCAAAAGGTCTTTGACATGTCAATTAGGACCAGGGCACAACAGATGGAGAGGATCCTCCGAGAGCCCATAAATATTTCCAACATCTAG 726 0.4614 MAALCNRVRSGIALSNKLGFLTSHRSSTLVAPLASRNYSTHVPGQKDTKIKVPLAMFGGSGNYASALYIAAVKAKAVEKVDSELHQFVEAVKNSSLVSQFVKDISVAKDVRVKAIEEISREAKFAEVTKNFLVVVAENGRLKNIDTIAKRFGELAMAYKGEVKATVTTVFPLPPEEEKALKETVQEIIGSGAKVSLEQKIDPSILGGLVLEFSQKVFDMSIRTRAQQMERILREPINISNI* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3878 241 PRINTS ATP synthase delta subunit signature 129 140 IPR000711 GO:0015986|GO:0046933
Lja4g3878 241 PRINTS ATP synthase delta subunit signature 192 207 IPR000711 GO:0015986|GO:0046933
Lja4g3878 241 PRINTS ATP synthase delta subunit signature 59 78 IPR000711 GO:0015986|GO:0046933
Lja4g3878 241 PRINTS ATP synthase delta subunit signature 207 225 IPR000711 GO:0015986|GO:0046933
Lja4g3878 241 PRINTS ATP synthase delta subunit signature 140 154 IPR000711 GO:0015986|GO:0046933
Lja4g3878 241 PANTHER ATP SYNTHASE DELTA CHAIN 30 234 IPR000711 GO:0015986|GO:0046933
Lja4g3878 241 PANTHER ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL 30 234 - -
Lja4g3878 241 Hamap ATP synthase subunit delta [atpD]. 55 234 IPR000711 GO:0015986|GO:0046933
Lja4g3878 241 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 194 213 IPR020781 GO:0015986|GO:0016020|GO:0046933
Lja4g3878 241 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 62 232 IPR000711 GO:0015986|GO:0046933
Lja4g3878 241 Gene3D - 60 152 IPR026015 -
Lja4g3878 241 Pfam ATP synthase delta (OSCP) subunit 61 232 IPR000711 GO:0015986|GO:0046933
Lja4g3878 241 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 60 160 IPR026015 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3878 84 241 Primary Pumps ATPases AT5G13450 57.595 4.23e-63 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3878 K02137 - gmx:100790990 360.147