Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3872 ATGGCAGGTGAGGACGTGGACTTTGCGAAGTTGTTCGCTACCAACAACTCCGATGATGATGGCATGTCCAACATTGATTTTCAAAGCGGTTTGAACTTCCTCAACATGGACGACCATTATGACGCTCTTAAGGAGGTGAATGGTCCTGATCCTGAAAATTGTGCATCAAAAAATGCTCCACCTAATGAGTCTGGCATCCTTGATACTTCTCAGATTCACCAAGTGCCTCAAGTGTTAGAAGAACCTCATTTCTCTGGGTTGGATTTAGTCAATTCGGGCACAAGGTGGTCTCCATTCTGTTTAGATGTATCAGATTCCTGGGCCGGAGGTTCCGATTCTTTATTTGATTCTGCAGTAAAATCTTTGCGTGACGACCGTAAACATGAAAACCTGGGACCTCAATCTCTGGCTTGCTCTTCACCGGGTGATTTCTTCGGGGACGCGTTCTCTTTTGGTGAAGATGATGAGATTTGCCCGAAAGAAAGGACCGGAGTTTCTAGCCGCGAGATACCTGCTAATGGTGTGGAATCTAGTCCCCTTGAGGCACATTCATATGGAGATAACTTGAATTTTGGTACATGGAGAGGTGAAAATGAGAGCCAACTCAAGCATGTGGGAGAGAATGCTGAATCTGAAAATGCTTCACTCAGCTCTATCATTCGGAATGGTGAACTGAATTTTGAAGGTTGTGTTAAAAACATCATTGGGGGGAATTCTGGGAATCAGGAAAATGGCTCGTATACCAATTTTGAAAATTCAGTCATGGATGCTGATAGATCTTTTCCTGTTGCATCTTCAGCTAATTCTACTGTTGGTCAAGATTCCCGTGTTCCTGATAATTTTATTGATTGCCAGCTATCTTCAAATTGTTACCTGGGAACATATGGTAGACCCGTTGTTTCTGACTCATCTATTCGTATATTGCCCTCTCAACCATGGACAAATGAAGAAATGATGAGTAACATGAAGGCTGAAAATGGGAAGTTCAATGCTGATATGGCATCGACACATATGAGTCGTGGCATGCACTCAAGCACTACTGGGGATATATCTTATCAAGATGGTCAAATTGTGTTAGCAGATAGTGGTTATCCATCTTTTTCTTCTGGTAATGTTATCTTCAATGGTGAGATTTCAATGCCGCTCTCAACCTACATGTCAAGTAGAGACCAATCATTTTATGTAAAATCTGAAAGAAAACAACAGATTACACCTTACCAAAATAACTTTCACAATGGTGCTGCTGAGTTAAATGTAGGCCAAGAGGTGAAGCAATTAACTAGTGTTTTTCCTTCAATGGGGTATCAGAGTAATGAATGTTTTAAGAATGAGGACACTTATGCAGTTCAAACATCTGCAGTATCCAATAATTATCAGCATATCATTGATGGAACTAATAGTAATTTTGAAGGAAGCGTGGGGAATTTGAATTTAAAAGTTGTAGATAGATCATTGCCCCATGCTCGAGCTCCAATTGCTAGTGAGAATCAGTTTGCTCGTGTTAAGAGAAGAGACAAGGAAATTATTCAACATAAACATGTTGATTCTGAAAAAGTCGGGAATTCTCTTAATATATCTCAATCTTCTAAACAAGTTAATTCCCAGCTCAATATGGTTGGAAGCAACAGACGGAAGGCATGTGATGAGAGAAATATATTACAAGTTGCTTTGCAGGTTTTGTCTCAGCCAAAATCAGAAGTTAGCTTACCAGATGGGTTGTTGGCAGTTCCTCTGTTAAGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCATGTTCATATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACGGTGACAACTATTGCATTAATATTAAAGCAAAGACCTCCAGCACTTACTGTGTGCCCTAATGTCCAAAAAGGTGAATTAGAAGCTTCCAATCTGAGCATGAATTTGTTGGAACAAGAAAAGGGAGGGCCATCTGCTGGGACCCTTATTGTTTGTCCCACTTCTGTCCTGCGCCAATGGGCCGAGGAGTTGCAAAATAAAGTAACCAGCCAAGCAAATCTCTCAGTGCTAGTGTACCATGGACGTAATCGAACAAAAGATCCTTATGAGGTGGCTAAGTATGATGTTGTCCTGACAACTTATGCCATTGTCAGCTTGGAGGTCCCTAAGCAGCCTATAGTTAACAAAGATGGTGAAGAAAAAGGAATTTTTGAAGATTATGCTCTACCAAGTAGGAAAAGGAAATACCCTTCTAATTCAGATATGAGTGGCAAGAAGGAATTGGATAGCACAATGCTTGAGGCTGTTTCCCAGCCTCTTGCAAAGGTGGCATGGTTTAGGGTTGTTCTGGATGAGGCCCAGAGTATAAAGAATCGCAAAACTCAATTTGCAAGTGCATGTTCGGATCTTCATGCTAAGCGTAGATGGTGTTTATCAGGAACTCCCATCCAGAATTCAATTGATGATCTCTATAGTTACTTCAAATTTCTAAGATATTCTCCTTATGATGTCTATCCATCATTTTGTGCTACAATTAAGATCCCAATTAGCAGAAGTCCAACAACAGGGTATAGAAAGCTACAAGCTGTCTTGAATACAATTATGTTACGTCGGACTAAAGGCACACTTCTGGATGGGGAACCTATTATTTCCTTGCCGCCTAAATTTGTAAAGCTGGAAAAAGTTGATTTTTCAAGGGAGGAACATGGTTTTTATTTAAAACTAGAGGCTGATTCACGTGCACAGTTTAAGAAATATGCTGATGCTGGAACTGTCCTGCAAAATTATAGCAACATTTTGCAGATGCTTCTGCACCTTAGACAAGCTTGTGATCACCCTCTGCTTGTCAAGCCATACAATTCTAGTTCTCTATGGAGATCTTCAGTTGAGATGGCAGAGAATCTTCCCCAGGAAAAACAAATATCTCTTTCGAAATGTTTAGAGGCTTCCTTGGCTCTCTGCGTCATTTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGCGGTCATGTTTTCTGTAACCAGTGCATCTATGACCGTCTTAGCGGCAATGACAAGCAGTGCCCTGCTACAAATTGCAAAGGTCGACTGAACACAGCTTCAGTGTTTTCTAACGCCACACTGAGCAATTGTTTTTCCAACCAGGATTGTGATAATTCACCTTGTTGCTCTGGTTGTGAAGTGGAAGAATCTGAACCATGGTCTCGAAGCCAATCATATGAATCTTCAAAAATGAAGGCTGCGCTGAAAGTTTTGAAATCAAGTACTGTTGAAGGGGAGAAAGCGATAGTCTTCACTCAGTGGACGAGTATGCTGGATTTACTAGGAGTGTCTCTTAAGAATTCTTCCATTCAGTATAGAAGGCTTGATGGAAATATGTCAGTTGCTGCAAGAGACAAGGCCATTAAAGATTTTAACGTCCTTCCTGAGGTTTCAGTTATGATTATGTGTTTGAAGGCTGCCAGTCTTGGCCTAAACTTGATTGTAGCCTCTCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGATCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTCACTGTTGTGCGATTAACTGTGAGAGATACAGTTGAAGATCGTATTCTTGCACTGCAGGAAAAGAAACGAAAGGTGGTTGCACATGCATTTGGGGAGAATGATACTGGTGGTCGTCAGAGTCAACTTACTGTGGATGAATTGAAATGTTTGTTCAAGATATGA 3744 0.4089 MAGEDVDFAKLFATNNSDDDGMSNIDFQSGLNFLNMDDHYDALKEVNGPDPENCASKNAPPNESGILDTSQIHQVPQVLEEPHFSGLDLVNSGTRWSPFCLDVSDSWAGGSDSLFDSAVKSLRDDRKHENLGPQSLACSSPGDFFGDAFSFGEDDEICPKERTGVSSREIPANGVESSPLEAHSYGDNLNFGTWRGENESQLKHVGENAESENASLSSIIRNGELNFEGCVKNIIGGNSGNQENGSYTNFENSVMDADRSFPVASSANSTVGQDSRVPDNFIDCQLSSNCYLGTYGRPVVSDSSIRILPSQPWTNEEMMSNMKAENGKFNADMASTHMSRGMHSSTTGDISYQDGQIVLADSGYPSFSSGNVIFNGEISMPLSTYMSSRDQSFYVKSERKQQITPYQNNFHNGAAELNVGQEVKQLTSVFPSMGYQSNECFKNEDTYAVQTSAVSNNYQHIIDGTNSNFEGSVGNLNLKVVDRSLPHARAPIASENQFARVKRRDKEIIQHKHVDSEKVGNSLNISQSSKQVNSQLNMVGSNRRKACDERNILQVALQVLSQPKSEVSLPDGLLAVPLLRHQRIALSWMVQKETSCSYCSGGILADDQGLGKTVTTIALILKQRPPALTVCPNVQKGELEASNLSMNLLEQEKGGPSAGTLIVCPTSVLRQWAEELQNKVTSQANLSVLVYHGRNRTKDPYEVAKYDVVLTTYAIVSLEVPKQPIVNKDGEEKGIFEDYALPSRKRKYPSNSDMSGKKELDSTMLEAVSQPLAKVAWFRVVLDEAQSIKNRKTQFASACSDLHAKRRWCLSGTPIQNSIDDLYSYFKFLRYSPYDVYPSFCATIKIPISRSPTTGYRKLQAVLNTIMLRRTKGTLLDGEPIISLPPKFVKLEKVDFSREEHGFYLKLEADSRAQFKKYADAGTVLQNYSNILQMLLHLRQACDHPLLVKPYNSSSLWRSSVEMAENLPQEKQISLSKCLEASLALCVICNDPPEDAVVSVCGHVFCNQCIYDRLSGNDKQCPATNCKGRLNTASVFSNATLSNCFSNQDCDNSPCCSGCEVEESEPWSRSQSYESSKMKAALKVLKSSTVEGEKAIVFTQWTSMLDLLGVSLKNSSIQYRRLDGNMSVAARDKAIKDFNVLPEVSVMIMCLKAASLGLNLIVASHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRLTVRDTVEDRILALQEKKRKVVAHAFGENDTGGRQSQLTVDELKCLFKI* 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3872 1247 Pfam Helicase conserved C-terminal domain 1077 1189 IPR001650 -
Lja4g3872 1247 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1077 1242 IPR001650 -
Lja4g3872 1247 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 389 1246 - -
Lja4g3872 1247 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 593 832 IPR014001 -
Lja4g3872 1247 SUPERFAMILY RING/U-box 983 1043 - -
Lja4g3872 1247 Pfam SNF2-related domain 593 947 IPR000330 GO:0005524|GO:0140658
Lja4g3872 1247 CDD DEXDc_SHPRH-like 578 870 - -
Lja4g3872 1247 Pfam Zinc finger, C3HC4 type (RING finger) 986 1022 - -
Lja4g3872 1247 ProSitePatterns Zinc finger RING-type signature. 1001 1010 IPR017907 -
Lja4g3872 1247 ProSiteProfiles Zinc finger RING-type profile. 986 1025 IPR001841 -
Lja4g3872 1247 SMART ring_2 986 1024 IPR001841 -
Lja4g3872 1247 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 389 1246 - -
Lja4g3872 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 878 1246 IPR027417 -
Lja4g3872 1247 MobiDBLite consensus disorder prediction 48 67 - -
Lja4g3872 1247 Gene3D - 885 1247 IPR027417 -
Lja4g3872 1247 Gene3D - 554 881 IPR038718 -
Lja4g3872 1247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 979 1037 IPR013083 -
Lja4g3872 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 870 IPR027417 -
Lja4g3872 1247 CDD SF2_C_SNF 1075 1199 - -
Lja4g3872 1247 SMART helicmild6 1106 1189 IPR001650 -
Lja4g3872 1247 SMART ultradead3 574 849 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3872 Lja-Chr4 71381672 71389459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3872 525 1245 RAD5 or RAD16-like Gene Family AT1G61140 57.789 0.0 854
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja4g3872 SNF2_N 2e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3872 - - lja:Lj4g3v0450230.1 1974.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3872 4 71381672 71389459 Lja4g3872 4 71381672 71389459 ECH
Lja4g3872 4 71381672 71389459 Lja6g3105 6 59722031 59731469 PCT