Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3868 ATGGACTGCACAGAGTCATCATCATCACGCTCTCACTATCCACAGCTCCCTCCCGGGTTTCGGTTCCACCCCACCGATGAAGAACTCGTCGTTCACTACCTCAAGAGTAAAGTTGCATCTATGCCCCTTCCTGTTGCCATCATCGCCGAAGTTGATCTCTACAAGTTCGACCCATGGGAACTCCCAAGTAAGGCCGTGTTTGGCCAACAAGAGTGGTACTTTTTCAGCCCGAGGGATCGGAAGTATCCAAATGGGGCGAGGCCAAACAGGGCTGCAACTTCTGGGTATTGGAAAGCAACTGGAACTGACAAGCCTATACTATCATCTGATGGGCACCAGAAAGTTGGAGTGAAGAAAGCACTTGTTTTTTATGGTGGGAAGCCTCCAAAAGGGGTTAAAACCAATTGGATTATGCATGAGTATAGGCTTGTTGATAAGTCTTTTGGTCCTAGCTTTAGAACTACAACTACTCATCCTCCAGTGCCTGCTCATCCTTCAAACTGCAACAAGAAGAATTCCCTGAGACTTGACGATTGGGTTTTGTGCCGAATATACAAGAAAAGCAATGGTACCACCACCATGCCAAGGCCACCACTAATGGAGAATGACAAGGAGCTTAATTCATTGGAGACCATGGTACCAACAATGTCAACTTTATCAATGCTAAACACGAACCAAAACACCACACCTCCATCGTCGAGAACTTATGAACCAGAAGGACTAGTTGAAAACCATGACAACTTCTTCCATGGATACTTAACACCTGATCAGAGCATGCAAAATGGTAACAATAATGATACCAATGATGATAATAGCTTCTGCGTGAAGCGCGCAATAGCACCATCGCAGTTTTTGAACGAGTCGGGGTCTGCGGGGTCATCTTTTTCGACCAAGCGATTCCATGGTGATCTTAATAGTGGAAGCAGCAATACTGAGGAAAACAACAACAATTCATTTGTTTCCCTGCTTAGCCAACTCCCTCAGAGTGCATCGTTTCATGCAAACGCGATTCTTGAGTCTGTTGAGGATGGTGTGATGAGGCAACAATTTCAACTTCCCAACATAAATTGGAACTAG 1077 0.454 MDCTESSSSRSHYPQLPPGFRFHPTDEELVVHYLKSKVASMPLPVAIIAEVDLYKFDPWELPSKAVFGQQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILSSDGHQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLVDKSFGPSFRTTTTHPPVPAHPSNCNKKNSLRLDDWVLCRIYKKSNGTTTMPRPPLMENDKELNSLETMVPTMSTLSMLNTNQNTTPPSSRTYEPEGLVENHDNFFHGYLTPDQSMQNGNNNDTNDDNSFCVKRAIAPSQFLNESGSAGSSFSTKRFHGDLNSGSSNTEENNNNSFVSLLSQLPQSASFHANAILESVEDGVMRQQFQLPNINWN* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3868 358 Gene3D NAC domain 25 191 IPR036093 GO:0003677|GO:0006355
Lja4g3868 358 PANTHER NAC TRANSCRIPTION FACTOR 56-LIKE 1 333 - -
Lja4g3868 358 MobiDBLite consensus disorder prediction 251 272 - -
Lja4g3868 358 PANTHER NAC TRANSCRIPTION FACTOR 56 1 333 - -
Lja4g3868 358 ProSiteProfiles NAC domain profile. 16 187 IPR003441 GO:0003677|GO:0006355
Lja4g3868 358 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Lja4g3868 358 SUPERFAMILY NAC domain 11 187 IPR036093 GO:0003677|GO:0006355
Lja4g3868 358 MobiDBLite consensus disorder prediction 246 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3868 Lja-Chr4 71312444 71315185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3868 1 358 NAC Transcription Factor Family AT1G61110 52.329 2.85e-111 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja4g3868 NAM 2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3868 - - gmx:100797132 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3868 4 71312444 71315185 Lja6g3101 6 59695913 59697572 PCT