Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3856 ATGTTTTACTCTCACCAGCTTCTCGCTCCAAAAGCACCACTCGGCCAAATCTGGACGAGGTTCGTGATCACTCTGTGCGCCTTTGCGATTCTTGCAAGCTCTGATCTCGCTTCGGACAGGGCGAGCCTGGTGGCGTTTCGCAACGCAGTAGGGGGGCGGACCGTTCGCTGGAATATGACGAATCCCAGGCCGTGCTCATGGCAAGGTGTGGTCTGCACCAACGGGAGGGTCACAGCGCTGCACTTGCCCCTTATGGGACTCTCCGGGAAGCTTCCGGCGGGTTTGGGGAACCTGACGAAGCTTCAAACGCTTTCCCTCCGGTTCAACGCTCTGACAGGACCAATTCCCGTTGATCTGGGGAACCTAGCTCATTTGGACACTCTCACCTTGGAGCACAACGGGTTCACCGGCTCAGTCCCTGACTTCAGTGCTCCCCCTCTGACTCACTTCAACGTGTCGTATAATCACTTAAATGGGTCAATTCCAAAAAGATTTTGGCGTTTGGACAAAAGCGCTTTTGAGGGAAATTTGCTCTGCGGTGTTCCCCTGCAACCTTGCCCTGGTAGCAACAATGGCAGCAAGGACAAAACAAGGAAGAGTGGGAAATTGTCTAAGCTCATACTGATACTGGGTATTGTGATTGTTTCTTTGTTTGGCGCGTTGATTCTGCTCCTTTTGTTCTGCTTGGGTAGAAAAACAAGGCAGAGTGGTGATTCCTCTAATGCTGAAGCTTCAGAGCACGTTGAGGCTATTGGGGATGGTGGCAGCGCCGTGAGTGATTCAGCATCAGCATCACCAAGGATGGAGAATATTTTGGTGTTTTTTGGGAATACTGAGATTGGGAGTACTTTAAGTTTTGATGAGTTGATGGATGGTACTGCTGTTGCTTTGGGGATAGGAACGTTTGGAATCACTTATCGTATGATGAGGAGGAGCCTGGTGATGAAGGTGTTGGAAAGTGTTAAAGTGACGAAGAGGCAATTCAGGAAGAAGATGGAGGAGTTGGGGAACCTGGATCATCACAATTTGTTACCACTTAGAGGCTATTGTTTCAAGGGCGATATAAAGATGGTTTTGTATGATTATCAAAGTGCAATGGGAAGCTTATATGCTCTGTTACATGAAGAAGGAAGAGTTCCAGTCAACTGGGAAAGGAGGTGTTTCATAGCCCTTGGTGCTGCGGAGGGGGTTGCATACTTACATTCACTGGGTCCAACCTCCTGCCATGGCAACATCAAGTCCACCAACATCTTGCTCACAGTGGAATATCAATCTCTGATATCTGAATTCGGCCTTGCCCATCTTGCTTTGCCAATCGCTCTCCCGAAGCTTGTCCCCAGCTACTGCGCCCCAGAGGCCTTCGTCGGCAACAAAATGTCCCAGAAAGCTGATGTTTACAGCTTTGGGATAATCCTCTTGGAGCTCCTAACAAGGAAGATTCCTGCTTCTTCTACACGAGAAGGGATTGACCTCCTATATTGGGTCCAACTTCTCCAGGAGCAGAATGTTGCTGATGATATGTTGAAGTTTTTGCACCTAGCTTTTGAATGCACTGCTGAAGACCCTGACATGAGGCCTCCTATGGAGATGGTGGCAAAGCGGATTGAGGAACTATATCTGAAGATATTGCGACTTGATGCTGTAGATGATCCCTACATTATTAATGGAGCAAGACAAGAAGAAGATCCATCCCAACATCTCCATCAAGCTGATGTGGAGAACATTACCTTATTTGACCGCTTTGAATCATCCCATACTAATGCGGAACCATACGATTGCTTCGAGAGGTTTCATATCGAAGGAGATGAGGAAACGCGGGTAAATGTAACTTCAGGAGATTACACTGAAATCCCAGCCACGCTTATGCCCTCCCCGCCACATGAAGATGACCAAAAGAGAGATGATATAATTCAGGACCAACATCAAGAACCCACAGTCATTCAGCAAAATGAAGTCATGGAAGTTAGAAAGGAACACATATGGAGAGGGCCAACTAAAAGGAAAAGAGGACAGCCAGTGGCAAACGCAATGGATAATGAGCAAACCATCATTCCTGTTCATTTACACCAGCATTGGCTTCAAATGCATCTGATATTGTCTCACGAAGAGGAAGAAAGAAAAAGGTTATCCCTTGATATTCATCCTGCATCTAACCATCCATCGTGTAATTTATTTACGGCTGAAAATAAAGAAATATATTATCCAGCTCCTCTTCTTGACTTATGGATTAAGAGCACTCAACCACCCCATAATTCTCCCTCAGAAAGGAATCCAACACACTATCCTCCAGAGCCATCATTTTCATCACCTCCAGCAGGACCTAATGAAGATCTCATGGTATATCCTTATGAAGACTTCGACACTAGGCTAGACAGACAGTTTTTGGTACCTCCAACAGAGAAGCTGCAGAACAATGGTCAAGATACTGAAATTCTCATGGATGAACTCAGGACTAACCTTGACCACGGCTTGAGAGTACCTGAAGCTACTCCCCAAGTCTGGTCAGGGAAATCTGGAGACAGCATACACTCCTTTCCAGGATCAGTATCTGAACATGGTCTTTCGTCGAATTCAGGCGGTGATAAAGGAAGGATCTCAAAGAAAAGACATTCATCATCTGGAAATGGCAGTGCAGGCCTTAAGCCAGTGGCTGAGAATGCAAAATTCAAGTTAGCTAGGGTGTCTGAAGTTGGTGATCCTACACCTGATCAAGAGCTACTTGTGGAAACAGGACCCACACAAACACAAGCAAACATCGATCATCCTAATGAGAAGATAGGGGATTCAATCCAAGCGCACATGAAAGCACATTTCAGCACACCTGGAGCTCCTGCTGGAATGACCAGGAAATCAGCAGCGCAGTTATTCTATCACACTCTTGTGCTTGTTACCGGCGATGCGCTGAGAGGTGAGCAAAAAGAGCCCTATGGGGACATTCTCATCTCTAGAGGGTAA 2955 0.467 MFYSHQLLAPKAPLGQIWTRFVITLCAFAILASSDLASDRASLVAFRNAVGGRTVRWNMTNPRPCSWQGVVCTNGRVTALHLPLMGLSGKLPAGLGNLTKLQTLSLRFNALTGPIPVDLGNLAHLDTLTLEHNGFTGSVPDFSAPPLTHFNVSYNHLNGSIPKRFWRLDKSAFEGNLLCGVPLQPCPGSNNGSKDKTRKSGKLSKLILILGIVIVSLFGALILLLLFCLGRKTRQSGDSSNAEASEHVEAIGDGGSAVSDSASASPRMENILVFFGNTEIGSTLSFDELMDGTAVALGIGTFGITYRMMRRSLVMKVLESVKVTKRQFRKKMEELGNLDHHNLLPLRGYCFKGDIKMVLYDYQSAMGSLYALLHEEGRVPVNWERRCFIALGAAEGVAYLHSLGPTSCHGNIKSTNILLTVEYQSLISEFGLAHLALPIALPKLVPSYCAPEAFVGNKMSQKADVYSFGIILLELLTRKIPASSTREGIDLLYWVQLLQEQNVADDMLKFLHLAFECTAEDPDMRPPMEMVAKRIEELYLKILRLDAVDDPYIINGARQEEDPSQHLHQADVENITLFDRFESSHTNAEPYDCFERFHIEGDEETRVNVTSGDYTEIPATLMPSPPHEDDQKRDDIIQDQHQEPTVIQQNEVMEVRKEHIWRGPTKRKRGQPVANAMDNEQTIIPVHLHQHWLQMHLILSHEEEERKRLSLDIHPASNHPSCNLFTAENKEIYYPAPLLDLWIKSTQPPHNSPSERNPTHYPPEPSFSSPPAGPNEDLMVYPYEDFDTRLDRQFLVPPTEKLQNNGQDTEILMDELRTNLDHGLRVPEATPQVWSGKSGDSIHSFPGSVSEHGLSSNSGGDKGRISKKRHSSSGNGSAGLKPVAENAKFKLARVSEVGDPTPDQELLVETGPTQTQANIDHPNEKIGDSIQAHMKAHFSTPGAPAGMTRKSAAQLFYHTLVLVTGDALRGEQKEPYGDILISRG* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3856 984 MobiDBLite consensus disorder prediction 834 861 - -
Lja4g3856 984 PANTHER OS05G0588300 PROTEIN 20 143 - -
Lja4g3856 984 MobiDBLite consensus disorder prediction 745 779 - -
Lja4g3856 984 Gene3D Transferase(Phosphotransferase) domain 1 365 546 - -
Lja4g3856 984 Gene3D Ribonuclease Inhibitor 35 199 IPR032675 -
Lja4g3856 984 Gene3D Phosphorylase Kinase; domain 1 283 362 - -
Lja4g3856 984 PANTHER OS05G0588300 PROTEIN 120 539 - -
Lja4g3856 984 MobiDBLite consensus disorder prediction 755 770 - -
Lja4g3856 984 Pfam Protein tyrosine and serine/threonine kinase 297 533 IPR001245 GO:0004672|GO:0006468
Lja4g3856 984 PANTHER LRR RECEPTOR-LIKE KINASE 120 539 - -
Lja4g3856 984 ProSiteProfiles Protein kinase domain profile. 291 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3856 984 PANTHER LRR RECEPTOR-LIKE KINASE 20 143 - -
Lja4g3856 984 SUPERFAMILY Protein kinase-like (PK-like) 297 538 IPR011009 -
Lja4g3856 984 MobiDBLite consensus disorder prediction 830 882 - -
Lja4g3856 984 Gene3D Structural maintenance of chromosome 1. Chain E 914 984 IPR023093 -
Lja4g3856 984 SUPERFAMILY "Winged helix" DNA-binding domain 938 983 IPR036390 -
Lja4g3856 984 Pfam Conserved region of Rad21 / Rec8 like protein 944 984 IPR006909 -
Lja4g3856 984 Pfam Leucine rich repeat N-terminal domain 37 72 IPR013210 -
Lja4g3856 984 SUPERFAMILY L domain-like 51 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3856 Lja-Chr4 71181064 71187898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3856 35 538 Receptor kinase-like Gene Family AT3G17840 38.274 1.55e-113 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja4g3856 PK_Tyr_Ser-Thr 6.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3856 - K06670 gmx:100791405 466.463