Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3851 ATGGACACTTGTTATCTGTTAGAGTCAAATTCAAGGGCGCCTAGAAAAAGATACTTTCATCAAGGGAATCATCCATTAAATGTTTACCCATTTGAGGCTTTTGTGTTTGGCTCATGGAAACCCGTGGAGCTCATTAAAGTTGAATCGGGAATGGTGATCTTACATTTTATGGACAAACAAGAGATAGCTATAGATAAATGTTTTTCAGACATGCGACCAAAGTCAGAGATAACTACTTTTGCAGACATGCGAATAAGGTCAAGGAAAGCTACTTTATCTGATTGTGCATCCTTCTTACGAAGTGGGATTGATGTGTGTGCGCTATCAAACTTTCAAAGTAGTGATGATTCAAATCAATCAAATTCCAATCCGGTGTGGGCTGATGCAAAAATAAATTCCATTGAGAGGAAACCCCACAATCATGAATGCTCATGTGTGTATCATGTAAGATTTTATACAAATCAAGTAGTTGGATTAAATCAAATTTTCATCCTTCAAAAGCTTGGACGTAAAAGCCTCGAAGATCAACCATTCCGGTGGGACTCGTCTGAAGACTACATCAGCAGACAACAAACAAGGTTGTCCTTAGGAAAATTTGTTGGCGACATTTCCTGTCTAGCTTCTATATCACTTATGAAGAACATGTGCTTTTGTGTGAGATCTTTGCAAAACAAGATTCTCTACCAAATCATGGGAACTGATACAAGGTATTCTGATTTTCACATAATAGCTATGAACTTCAAACTCAAAGGTCGTATGTCACAATCCTCTATTTTTGAACTTGACACTATGAGCATTGTCCCTTTTGTGCAAAATAATGAAGCAGAAGTGTTTCCACCATTACGACGCTCGACACGTCGAATCAAGGAACCTGAACGTTACTTGGGCTATTGTGATGTTGGTTCAGGTTTCGTAAATCGAACTGGGAAATCCAAGATGAACACAGGGGAAAATGATGAAAAGTTGGCACCAGTGAATTACACTTTTGAAGAGGATGTTGAAACTAGTGTTCAAAAGGTTGATACAAAGGTGAGTTGTGATGCTGATGTCATAGAAAAGGAACATCTTAAACCAATTTCTGTTTTTCTAGCTCATGAAAAAATTGGTTTAGATGCTCTTGAACCCCGAATTCTCCAAGAGAGTGGTGAAAGTTCTTCCCACTTTCATGATATTTGGGGATCAAAGAACAATGGTGATGCTGGCATGTGCAATATTAAGCTCAGTGGCAATGAAAAAGTGATCGGAGAAACCTCTTCATTTCGTTATTATAATCTCAGAAGCGGTAAGAAGTATCAGAGGAAGGATTTGTTTGACTCGGATGATATGATGGTGGATCTGGAACCCAAATGGGATGGGCTGAATTCTAAAAGAGGAGAAGAACGTAAGAGGCGACGTCGTTCAGATTTTTTAAGAAATAGAAATAATGAGGAAGATAACGATGAAGAACGAGCTCGGAGACGTAGGGCCTTAGATGTAAATGCATCCAAGGAAATGATAGATTCATATTTAAAGGATATGGATAAATTACTAGCAATAGAAGAAGCACCTATTACTGAAAAATGGAAGGAAACAATCAACTTTGGCAAAGGCAAGGAAACTGAGAAAACTCAAAGAGAAGAGCAGGTGAAGGAAGAAGTTTCTGAAATCGAAATGTTATGGAGGGAAATGGATGATGCAATGATAGAAGGTTTTCTTCAAGAACAAACGGAGGATTCAAGTGCTCCAACTAAGGAAGAGACTACCAGAACTTGTGAGCATGATTATAGATTAGATGAGCAACTTGGAATTTATTGTCATAGATGCGGCTTTGTGAAGGAAGAGATAAGATACATCATGCCATCCTTTGCTAATGATAAACAAAATTCAGATGCTAATGATAAACCAAAGTCTGATGATCAGCAAAATGTTGATGATGCTCCAAAGGGTGATGATAATGATAATGATCTCCCTTTGCTTCTTACTAATGTTACTTGTGATGAGCCTATATCTATTGAAAATGAAAGTGTGTGGGGATTCATTCCTGAACTTAGAGAAAAAATGCACCTCCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCAAAACATTGCAGGGTCCATGAACCCAACCCATATGGAAGCACAATCTGAAAACAAAGGAGGTTGTGTGATATCTCATGCTCCTGGAGCTGGAAAAACATTCCTCACAATTTCATTTCTTATTAGCTATTTGAAGTTATTCCCAAACAAGAAACCCTTAATCCTTGCTCCAAAAACCACACTTTACACTTGGTACCAAGATTTTATCAAGTGGAATTTTCCAATGCCAGTGCATCTAATTCACAGTCGTAGAAGCCAGAGAAATTTCAGTGAAAACTCATTTGCTCTTCCTGGAATTCCAAATCCGAATGAGGATGTAAAACACACTATGGATTGCTTGGAAAAGATTCAAAACTGGCATGCACACCCTAGTGTTTTGGTCATGGGCTACACTTCATTTTTATCATTAATGAATGATAATTCAAAGTATGAACACAGAAAGTACATGGCTAAAGCCTTGAGGGAAAGCCCTGGGATTCTTGTGTTGGATGAAGGGCACAATCCGAGAAGCACAAAATCGAATTTGAGGAAATGGTTGATGAAAGTAAATACAAAACTGAGAATACTCCTCTCTGGCACATTATTTCAGAACAATTTTGGTGAGTATTTTAACACACTTTCCTTGGCAAGACCAAGGTTTGTTCATGAAGTTCTGCAAGAGTTAGATCCAAAATATATGAAGAGTGAAGCAGAAAAAAAAGCTCCTCATTTAGTCGAGTCACGGGCTAGGAAATTCTTCATGGATAAAATTACAGTGAAAATTGATGCAGGTAATGAAAATGTTGAGGAGAAGATGATGGGTCTTAATATGTTGAAGAAAATCACAAGTGGTTTTATTGATGTTTATGATAGCGGGAATGCGGATAGTATATTACCTGGTTTACAAATCTATACTTTGCTGATGAATAATACTGAGAATCAGAGTGAAATCTTGCAGAAACTACAGAAGAAAATGAACCGAAGCGGAGGGTACCCTCTTGAGGTAGAGTTTCTCATAACCCTTGTGTCAATACATCCATGGCTGATCTCAACAACCAGATGTGCCAAAAAGTTTTTCACTTCGAGCCATTTGGAGCAGCTAGAGAAATGTAAGATTGATATGAAAATAGGATCAAAGGTGAAATTTGTTATGAGTCTTGTCTTCCGCGTGGTCAAGATGAAGGAGAAAGTTATTATCTTTTGTCGCAACCTTGCACCAATGTGGCTGCTTCTAGAGTTGTTTGAGACGTACTTCAAGTGGAAATTGGGAGTAGAAATCTTGACACTTCATGGAGAACAAGAGCTTTTTGAGCGCGGCAAAGTCATTGATAAGTTTGAGGACCGTCGTGGAGCCTCAAAGGTTCTCCTCGCTTCAATCAGCGCTTGCGCAGAAGGTATTAGTCTGACAGCAGCTTCACGTGTGATTTTCTTCGACTCAGAGTGGAATCCGTCCAAAACAAAGCAAGCTATTGCACGGGCTTTCCGTCCTGGTCAAGAAAAAGTCGTTTATGTTTATCAGCTATTAGTTGCCGGGTCATTTGAAGAGGATAAATATAAGAAAACCAATTGGAAAGATTGGGTTTCCAGGATGATTTTCAGTGAGGATTTTGTGGAGGACCCGTCCAAATGGCAAGCACAGAAAATTGAAGATGATGTGCTGAGAGAAATGGCTGAGGTGGATAAGTATAAATCAATCCATCAAATTGTGAAGAATGAAAAGGCCTCGACAAACTTATGA 3792 0.3863 MDTCYLLESNSRAPRKRYFHQGNHPLNVYPFEAFVFGSWKPVELIKVESGMVILHFMDKQEIAIDKCFSDMRPKSEITTFADMRIRSRKATLSDCASFLRSGIDVCALSNFQSSDDSNQSNSNPVWADAKINSIERKPHNHECSCVYHVRFYTNQVVGLNQIFILQKLGRKSLEDQPFRWDSSEDYISRQQTRLSLGKFVGDISCLASISLMKNMCFCVRSLQNKILYQIMGTDTRYSDFHIIAMNFKLKGRMSQSSIFELDTMSIVPFVQNNEAEVFPPLRRSTRRIKEPERYLGYCDVGSGFVNRTGKSKMNTGENDEKLAPVNYTFEEDVETSVQKVDTKVSCDADVIEKEHLKPISVFLAHEKIGLDALEPRILQESGESSSHFHDIWGSKNNGDAGMCNIKLSGNEKVIGETSSFRYYNLRSGKKYQRKDLFDSDDMMVDLEPKWDGLNSKRGEERKRRRRSDFLRNRNNEEDNDEERARRRRALDVNASKEMIDSYLKDMDKLLAIEEAPITEKWKETINFGKGKETEKTQREEQVKEEVSEIEMLWREMDDAMIEGFLQEQTEDSSAPTKEETTRTCEHDYRLDEQLGIYCHRCGFVKEEIRYIMPSFANDKQNSDANDKPKSDDQQNVDDAPKGDDNDNDLPLLLTNVTCDEPISIENESVWGFIPELREKMHLHQKKAFEFLWQNIAGSMNPTHMEAQSENKGGCVISHAPGAGKTFLTISFLISYLKLFPNKKPLILAPKTTLYTWYQDFIKWNFPMPVHLIHSRRSQRNFSENSFALPGIPNPNEDVKHTMDCLEKIQNWHAHPSVLVMGYTSFLSLMNDNSKYEHRKYMAKALRESPGILVLDEGHNPRSTKSNLRKWLMKVNTKLRILLSGTLFQNNFGEYFNTLSLARPRFVHEVLQELDPKYMKSEAEKKAPHLVESRARKFFMDKITVKIDAGNENVEEKMMGLNMLKKITSGFIDVYDSGNADSILPGLQIYTLLMNNTENQSEILQKLQKKMNRSGGYPLEVEFLITLVSIHPWLISTTRCAKKFFTSSHLEQLEKCKIDMKIGSKVKFVMSLVFRVVKMKEKVIIFCRNLAPMWLLLELFETYFKWKLGVEILTLHGEQELFERGKVIDKFEDRRGASKVLLASISACAEGISLTAASRVIFFDSEWNPSKTKQAIARAFRPGQEKVVYVYQLLVAGSFEEDKYKKTNWKDWVSRMIFSEDFVEDPSKWQAQKIEDDVLREMAEVDKYKSIHQIVKNEKASTNL* 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3851 1263 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 30 1261 IPR044567 GO:0080188
Lja4g3851 1263 MobiDBLite consensus disorder prediction 622 645 - -
Lja4g3851 1263 Pfam SNF2-related domain 682 910 IPR000330 GO:0005524|GO:0140658
Lja4g3851 1263 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 705 904 IPR014001 -
Lja4g3851 1263 Gene3D - 659 942 IPR038718 -
Lja4g3851 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 849 1220 IPR027417 -
Lja4g3851 1263 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 30 1261 - -
Lja4g3851 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 663 906 IPR027417 -
Lja4g3851 1263 SMART helicmild6 1097 1182 IPR001650 -
Lja4g3851 1263 Pfam Helicase conserved C-terminal domain 1066 1181 IPR001650 -
Lja4g3851 1263 SMART ultradead3 676 912 IPR014001 -
Lja4g3851 1263 MobiDBLite consensus disorder prediction 617 650 - -
Lja4g3851 1263 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1070 1234 IPR001650 -
Lja4g3851 1263 CDD SF2_C_SNF 1056 1193 - -
Lja4g3851 1263 Gene3D - 986 1262 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3851 Lja-Chr4 71117022 71122198 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3851 1095 1200 RAD5 or RAD16-like Gene Family AT5G05130 41.121 1.69e-12 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja4g3851 SNF2_N 3.3e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3851 K10875 - gmx:100811703 1213.36