Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3850 ATGAGTTGTGGCTGCTTTGGAGCCTCAACTCTCAAGAACAAAAAAAGCATTTCTCATGCTACTAATGAAATTGATGGGTTTCCCCTTGATAATATTACGCATTTCTCTGAAAAGGACCTGAGACTAGCCACTGATAACTATCATCCAAGCAAAAAGATAGGACGAGGAGGTTTTGGAACTGTTTACCAGGGAACTTTAAAGAATAGAAGACAGGTTGCTGTGAAGTCCCTTTCAGTTGGGTCAAAACAAGGAGTTCGTGAATTTTTAACTGAGATAAAAACTATATCAAATGTCAAGCATCCAAACCTTGTTGAATTAGTCGGTTGCTGCGTGCAAGGACCTAACCGTATATTAGTCTATGAATATGTGGAAAATAACAGCCTTGATCGCGCATTACTTGGATCAAGAAGTACAAACATCAAACTAGACTGGGAAAAAAGATCTGCTATTTGTAAGGGTACTTCTAGGGGTCTTGCATTTCTCCATGAAGAACTTGTGCCACACATTGTGCACAGAGACATTAAGGCTAGCAACATACTACTTGACAGAGACTTCAATCCAAAAATAGGAGATTTTGGGTTGGCTAAATTATTTCCAGATGACATCACTCACATTAGCACGAGAATTGCTGGTACAACCGGTTACTTAGCACCGGAGTATGCAATGGGTGGCCAGTTAACCATGAAGGCTGACGTGTACAGTTTTGGGGTTCTTATACTTGAAGTAGTAAGTGGCAAAGGCAGTGCGAGGACAAACTGGGGAGGGTCAAACAAATACCTCTTGGAATGGGCCTGGCAACTTCATGAAGAGGGGAAACTGCTGGAGCTTGTGGATCCAGACATGGATGATTTTCCTGAGGAAGAAGTAATTAGGTACATGAAGGTTGCTTTTTTTTGCACACAGGCAGCAGCAAGCAGAAGGCCACTGATGTCCCAGGTTGTTGACATGCTGACCAAGAAAATCAGGCTCAATGAAAAGCAACTCACAGCACCAGGGTTCTTCCAGGACTCAGGAGATTCCTCTCTGAAAAAGTCAACACTTGAATCCACAAGCTATCAATTTAGCTCTGCCCCTGTCAGTATTACTCATGTGGCCCCACGTTGA 1104 0.4275 MSCGCFGASTLKNKKSISHATNEIDGFPLDNITHFSEKDLRLATDNYHPSKKIGRGGFGTVYQGTLKNRRQVAVKSLSVGSKQGVREFLTEIKTISNVKHPNLVELVGCCVQGPNRILVYEYVENNSLDRALLGSRSTNIKLDWEKRSAICKGTSRGLAFLHEELVPHIVHRDIKASNILLDRDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYAMGGQLTMKADVYSFGVLILEVVSGKGSARTNWGGSNKYLLEWAWQLHEEGKLLELVDPDMDDFPEEEVIRYMKVAFFCTQAAASRRPLMSQVVDMLTKKIRLNEKQLTAPGFFQDSGDSSLKKSTLESTSYQFSSAPVSITHVAPR* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3850 367 Gene3D Transferase(Phosphotransferase) domain 1 123 332 - -
Lja4g3850 367 Pfam Protein kinase domain 47 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3850 367 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Lja4g3850 367 Gene3D Phosphorylase Kinase; domain 1 17 122 - -
Lja4g3850 367 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 359 - -
Lja4g3850 367 PANTHER - 1 359 - -
Lja4g3850 367 ProSiteProfiles Protein kinase domain profile. 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3850 367 CDD STKc_IRAK 53 319 - -
Lja4g3850 367 SUPERFAMILY Protein kinase-like (PK-like) 31 343 IPR011009 -
Lja4g3850 367 SMART serkin_6 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3850 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3850 Lja-Chr4 71102848 71107857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3850 35 366 Receptor kinase-like Gene Family AT1G56120 49.398 6.97e-107 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja4g3850 Pkinase 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3850 - - gmx:100775344 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3850 4 71102848 71107857 Lja6g3084 6 59550740 59554374 PCT