Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3844 ATGGATAACTCCTATAACAACAACAACAACAATATGGATACCAATTTGGTGCAAGATGTGATTGATGACCTTCCCTATCAGCAATCCATGTGGGACCCTAATGTTCAAGAATTCCAAAATATGAACTATGCTAATCACTTGGAACACCAACCACATGAACAACAATTTCACCAAATTGAGGCACAAAGCTACAACCCCTCTTCCATAATGGACCCTCCTTACCCTGCAATAGATCTCCACTTACCCACATGCTCAGCTTCATCTTTGCTCACCACTCCACCCAATTTTCACAATTCAATGGGATTTCTAGGAGACCTTCCAATAGGATCAGACAACACAAGTGCTGCATCCTCAGTTTTGTGTGATCCTTTGTTTCATTTGAACCAAGTTCCTCCACCACCTACTGCCTTTAGAGAGCTGTTCCAGTCTCTCCCCCGCGGCTACAGCTTTCCGATGAGCTCCCAGAACGGCTCTATTTTCGGCGGAGAAGGCGATGAGATAGATGGAGATGGTGGTAGCCAGCTTGACATGGGGGTGCTGGAATTCAATACTATCAATAGGGTCACAGCTTCTGTTGGCAAAGGAAGGGAAGGAAAAGGTACTGAGAAAGAAAGAAGAGAGCAATTGAATGGAAAATACAAGATCTTGAGGAGTCTTATCCCAAGCCCCACCAAGATTGATAGAGCATCTGTGGTGGGAGATGCTATTGACTACATAAGGGAACTGATTAGAACACTGAATGAGCTCAAGATATTGGTGGAGAAGAAAAGGTGTGGGAGGGAGAGGTGCAAGAGGGCCAGAACTGAAGATGATGGTGCAGAGAGCTGTAACATAAAGCCTTTTGGTGATCCAGATGGGCATATTAGGACCTCATGGCTCCAGAGGAAATCGAAAGATAGCGAGGTTGATGTCCGGATTATCGATGACGATGTTACAATCAAACTCTCTCAGAGGAAGAAGATTAACTGCCTTCTGTTTGCCTCCAAGGTTCTGGATGAGCTTCAGTTGGAAATTCATCATGTTGCAGGTGGACATGTTGGTGAATATTGCAGTTTCTTGCTCAATAGCAAGACAATTGAAGGTTCATCAGTCTATGCAAGTGCCATAGCCAACAGAATGATTGATGTTCTGGACACTCAGTACTACGCAGCAGCAGTTCCACACTCAAGTAGCTATTAG 1179 0.4453 MDNSYNNNNNNMDTNLVQDVIDDLPYQQSMWDPNVQEFQNMNYANHLEHQPHEQQFHQIEAQSYNPSSIMDPPYPAIDLHLPTCSASSLLTTPPNFHNSMGFLGDLPIGSDNTSAASSVLCDPLFHLNQVPPPPTAFRELFQSLPRGYSFPMSSQNGSIFGGEGDEIDGDGGSQLDMGVLEFNTINRVTASVGKGREGKGTEKERREQLNGKYKILRSLIPSPTKIDRASVVGDAIDYIRELIRTLNELKILVEKKRCGRERCKRARTEDDGAESCNIKPFGDPDGHIRTSWLQRKSKDSEVDVRIIDDDVTIKLSQRKKINCLLFASKVLDELQLEIHHVAGGHVGEYCSFLLNSKTIEGSSVYASAIANRMIDVLDTQYYAAAVPHSSSY* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3844 392 Gene3D - 199 251 IPR036638 GO:0046983
Lja4g3844 392 CDD bHLH_AtMYC1_like 201 262 IPR045896 -
Lja4g3844 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Lja4g3844 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 259 IPR036638 GO:0046983
Lja4g3844 392 PANTHER TRANSCRIPTION FACTOR BHLH91 15 386 IPR045895 GO:0006355|GO:0048658
Lja4g3844 392 Pfam Helix-loop-helix DNA-binding domain 201 242 IPR011598 GO:0046983
Lja4g3844 392 SMART finulus 199 248 IPR011598 GO:0046983
Lja4g3844 392 PANTHER TRANSCRIPTION FACTOR BHLH91 15 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3844 Lja-Chr4 71013471 71015251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3844 27 385 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31220 41.500 8.43e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g3844 HLH 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3844 - - lja:Lj4g3v0451060.1 743.421