Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3839 ATGGCTGAAAATATGGTGGAGCTCAACCTTGATTTAGGTAGCTTCTTCAGCCGTCATGCAGGGCAGTCCCCTAGGCCGCGGTGCCCGGCACCGTTTCTCTTGAAGACCTATGATTTGTTAGAAGAAGGTGGTGCAGAAGAAGATGGTTCCAAAATTGTGTCATGGAATTCAGAAGGAACTGGTTTTGTTGTGTGGTCTCCAGCTGAATTCTCAGAACTCACCTTGCCTAGATATTTCAAGCACAACAACTTCTCTAGCTTCATTCGCCAATTGAACACATATGGTTTCAAGAAAACATCATCTAAAAGGTGGGAATTCCAGCATGAGAAATTTCAGAGGGGTTGCAGGCATATGCTGGTTGATATCACGAGGAAGAAGTGCGAGCCAAGTGTGTTTCCTTCATACCTCAAGTCTTCTTCTGAGGAAAACGCAACAATGACATCTAATTCAACGGAAGAAAGCAAAGATTATCATGAACTACTCATGGAGGAGAACAAGAACCTAAAGAAGGAGAGATTGGAGCTGCAGACGCAGATAGCTGAATGCAAATCACTACAAATGAAGTTGTTGGACTGCCTCTCTCAATTTATGGACAAACACCAAAATAAAGTTAGGAAAACATGCTAA 627 0.429 MAENMVELNLDLGSFFSRHAGQSPRPRCPAPFLLKTYDLLEEGGAEEDGSKIVSWNSEGTGFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKTSSKRWEFQHEKFQRGCRHMLVDITRKKCEPSVFPSYLKSSSEENATMTSNSTEESKDYHELLMEENKNLKKERLELQTQIAECKSLQMKLLDCLSQFMDKHQNKVRKTC* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3839 208 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g3839 208 PRINTS Heat shock factor (HSF) domain signature 87 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g3839 208 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 207 IPR027725 -
Lja4g3839 208 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A-LIKE 18 207 - -
Lja4g3839 208 SMART hsfneu3 28 125 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g3839 208 Coils Coil 158 188 - -
Lja4g3839 208 Pfam HSF-type DNA-binding 32 125 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g3839 208 SUPERFAMILY "Winged helix" DNA-binding domain 29 125 IPR036390 -
Lja4g3839 208 Gene3D - 26 126 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3839 Lja-Chr4 70973996 70975908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3839 28 197 HSF AT5G62020 34.184 6.28e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja4g3839 HSF_DNA-bind 9.8e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3839 K09419 - gmx:100783723 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3839 4 70973996 70975908 Lja4g3839 4 70973996 70975908 ECH