Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3838 ATGGCGAGGCTCTTCGGTTCTTCTTCCTCCGATTCAATCACGATGATCGTCACCAACACGCCTTCACAGGACCTCGCTCTCTCCAACCTCGCCTACTGCTCCCCCTCCGATCTCCCCAAATTCGCCGTCTCCGGTCGCGCTAACCTCTTCCTCGCTTCCATCGCCGATTCCTTCGTCTACGCTCTCTCAGGTCATGAAAGCATTCGCAGTGGTCATATCGCGTTGAATTCAATTCAGCGTCGGTGTGTTAGAGTTTCTGCTGCTGAATCCATAACTGTCACCCGATTCGTGCCGCCTGAAAATTTTAACCTGGCGCTGTTGACGCTTGAATTGGACTTCATTAAAAGGGTTGGAAACAGGAGTGAACAGATTGATGCTGTTATACTGGCTAAGCAACTTCGGAAGAGGTTTATGAACCAGGTCATGACAGCCGGGCAGAAAGTGTTATTTGAGTTTCATGGAAATAATTATAGCTTTACTGTCAATCAAGCTACTCTGGAGGGTCATGAAAAGTCTAAAACTATTGAAAGAGGGATGATTTCAGATGACACATATATTGTTTTTGAAACTGCACGGGATAGTGGAATCAAGGTTGTCAATCAGCGTGAGGCTGCGACTAGCAACATTTTTAAGCAGAAAGAATTTAACCTTGAGTCTCTGGGTATTGGTGGCCTGAGTGCAGAGTTTGCAGATATATTTCGAAGAGCTTTTGCATCTCGTGTTTTCCCTGCCCACGTGACATCTAAATTAGGAATCAAGCATGTGAAGGGCATGCTGCTTTATGGGCCTCCTGGTACTGGAAAGACCCTTATGGCACGTCAAATTGGAAAAATTTTGAATGGAAAGGAACCTAAGATTATAAATGGGCCAGAAGTTCTGAGCAAATTTGTTGGTGAAACTGAGAAGAATGTGAGGGACCTTTTTGCTGATGCTGAACAAGATCAGAGGACCCTAGGGGATGAAAGTGAATTGCATGTTATAATCTTTGATGAAATTGATGCCATTTGTAAGTCAAGAGGTTCAACTCGAGATGGTACTGGAGTTCATGATAGCATTGTTAACCAGCTTCTTACTAAGATAGATGGTGTGGAGTCACTAAATAATGTTTTGCTTATTGGAATGACTAACAGAAAGGATATGCTTGATGAAGCTCTCTTAAGACCAGGGCGGTTGGAAGTCCAGGTTGAGATAAGCCTTCCTGATGAAAATGGTCGACTTCAAATTCTTCATATTCATACTAACAAGATGAAAGAGAATTCTTTTCTAGCTCCTGATGTGAACCTTCCAGAGCTTGCTGCTCGAACAAAAAATTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCTGTCTCATATGCTTTAAATAGACAATTGAGCCTTGAAGATCTCACTAGGCCAGTGGAGGAAGAGAATATTAAGGTCACGATGGATGACTTTTTGAATGCAATCCATGAAGTTGTTCCTGCATTTGGAGCTTCAACCGATGACCTTGAAAGATGCAGACTCCATGGCATGGTCGACTGTGGTGATCGACATAAGCACATTTATCAAAGAGCAATGCTACTTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCTCGCTTGTTACCTGTCTTCTGGAAGGTTCTACCGGCAGTGGTAAAACCGCCCTCGCAGCTACCGTTGGTGTTGACAGTGACTTCCCATATGTCAAGATAGTTTCAGCTGAATCAATGATTGGTCTACATGAGAGCACTAAATGTGCACAGATTATTAAGGTTTTTGAGGATGCATACAAGTCACCGTTGAGTGTTATTATTCTTGATGACATTGAGAGGTTAACAGAGTATATTGCCATTGGTCCTCGTTTTTCAAACTTGATTTCTCAAACACTACTTGTCCTACTCAAACGGCTTCCACCAAAGGGGAAAAAACTCTTGGTTATTGGTACGACAAGTGAACTGGGTTTCTTGGACTCGATTGGATTTTGTGATACTTTCTCTGTCACTTACCATGTTCCTGCCTTGAACACAAATGATGCAAAGAAGGTCCTACATGAGTTGAATGTTTTTGCTGAAGAAGATATTGATTCTGCTGCCGAGGCATTGAATGATATACCTATCAGGAAGCTATACATGTTGGTTGAGATGGCAGCGCAAGGTTCCGAAGGTGGATCTGCTGAAGCTATCTTTTCTGGCAAAGAGAAGATTAATATATCTCATTTCTATGATTGCCTACAGGACGTTATTAGATTATAA 2238 0.4263 MARLFGSSSSDSITMIVTNTPSQDLALSNLAYCSPSDLPKFAVSGRANLFLASIADSFVYALSGHESIRSGHIALNSIQRRCVRVSAAESITVTRFVPPENFNLALLTLELDFIKRVGNRSEQIDAVILAKQLRKRFMNQVMTAGQKVLFEFHGNNYSFTVNQATLEGHEKSKTIERGMISDDTYIVFETARDSGIKVVNQREAATSNIFKQKEFNLESLGIGGLSAEFADIFRRAFASRVFPAHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIINGPEVLSKFVGETEKNVRDLFADAEQDQRTLGDESELHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILHIHTNKMKENSFLAPDVNLPELAARTKNYSGAELEGVVKSAVSYALNRQLSLEDLTRPVEEENIKVTMDDFLNAIHEVVPAFGASTDDLERCRLHGMVDCGDRHKHIYQRAMLLVEQVKVSKGSSLVTCLLEGSTGSGKTALAATVGVDSDFPYVKIVSAESMIGLHESTKCAQIIKVFEDAYKSPLSVIILDDIERLTEYIAIGPRFSNLISQTLLVLLKRLPPKGKKLLVIGTTSELGFLDSIGFCDTFSVTYHVPALNTNDAKKVLHELNVFAEEDIDSAAEALNDIPIRKLYMLVEMAAQGSEGGSAEAIFSGKEKINISHFYDCLQDVIRL* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3838 745 Pfam Cell division protein 48 (CDC48), domain 2 123 165 IPR004201 -
Lja4g3838 745 SUPERFAMILY Cdc48 domain 2-like 99 203 IPR029067 -
Lja4g3838 745 Gene3D - 9 96 - -
Lja4g3838 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 497 IPR027417 -
Lja4g3838 745 SMART AAA_5 534 672 IPR003593 -
Lja4g3838 745 SMART AAA_5 254 401 IPR003593 -
Lja4g3838 745 PANTHER VESICULAR-FUSION PROTEIN NSF 63 744 IPR039812 GO:0016887|GO:0035494
Lja4g3838 745 SMART CDC48_N_2 14 99 IPR003338 -
Lja4g3838 745 PANTHER VESICULAR-FUSION PROTEIN NSF 6 40 IPR039812 GO:0016887|GO:0035494
Lja4g3838 745 Gene3D - 400 487 - -
Lja4g3838 745 Pfam AAA+ lid domain 425 480 IPR041569 -
Lja4g3838 745 Gene3D - 207 399 IPR027417 -
Lja4g3838 745 PANTHER BNAA03G50350D PROTEIN 63 744 - -
Lja4g3838 745 PANTHER BNAA03G50350D PROTEIN 6 40 - -
Lja4g3838 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 498 714 IPR027417 -
Lja4g3838 745 CDD AAA 256 399 - -
Lja4g3838 745 ProSitePatterns AAA-protein family signature. 369 387 IPR003960 GO:0005524|GO:0016887
Lja4g3838 745 CDD AAA 528 646 - -
Lja4g3838 745 Gene3D - 99 198 - -
Lja4g3838 745 Gene3D - 496 667 IPR027417 -
Lja4g3838 745 SUPERFAMILY ADC-like 12 96 IPR009010 -
Lja4g3838 745 Pfam ATPase family associated with various cellular activities (AAA) 539 652 IPR003959 GO:0005524|GO:0016887
Lja4g3838 745 Pfam ATPase family associated with various cellular activities (AAA) 258 398 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3838 Lja-Chr4 70963816 70972564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3838 222 473 Calmodulin-binding Proteins AT3G56690 33.071 3.53e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3838 K06027 - gmx:100779259 1272.3