Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3837 ATGGCCTTTGAGCACTATCTTACCCAGGAATGGGAAGGATCAGAGACAGAGACAGTAAGTTGTGATGGTGGTTTTGATTGCAATATCTGCTTGGAGTTTGCACATGAACCAGTGGTGACTCTATGTGGTCACCTTTACTGCTGGCCCTGCATCTACAAGTGGCTCTATGTGCAAAGTGCTTCTCTTGCACCTGATGAGCCACCACAATGCCCTGTTTGCAAGGATGGCATATCACACACAACAATGGTTCCTCTCTATGGTCGTGGCCCAAGTGACTCTAATTTGAAGGTACAACATAAAGATGTTTTGATACCACCAAGACCAACTTGTTCTGGTGCTAAATCTCTCTTTGCAGCATCTTCTCAAAGTAGTGGCCAGCAGCTTCCATATCGCAATCCTTATCAGAATCAAGATTTCAATCAAGAAGAGGAGCATGATGATGAGACATCTCAACAAATGGTCACTAATCTTGGTGGTGCTACCATGGCAACAGGATTCCCCCACCTTGTGTTTGGGATGTTTGGGGTGGGAAGCTCAGCAAATTCATACAACAACCCAAATTCACCTCCCAGGTTTAGAAGGCTAGAGATGCAGGCTGACAAATCATTGAACAGAATTTCAATTTTTCTCCTTTGCTGCTTTCTTCTATGTCTCATTGTGTTCTGA 666 0.4429 MAFEHYLTQEWEGSETETVSCDGGFDCNICLEFAHEPVVTLCGHLYCWPCIYKWLYVQSASLAPDEPPQCPVCKDGISHTTMVPLYGRGPSDSNLKVQHKDVLIPPRPTCSGAKSLFAASSQSSGQQLPYRNPYQNQDFNQEEEHDDETSQQMVTNLGGATMATGFPHLVFGMFGVGSSANSYNNPNSPPRFRRLEMQADKSLNRISIFLLCCFLLCLIVF* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3837 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 221 - -
Lja4g3837 221 ProSiteProfiles Zinc finger RING-type profile. 27 74 IPR001841 -
Lja4g3837 221 Pfam Zinc finger, C3HC4 type (RING finger) 27 73 IPR018957 GO:0046872
Lja4g3837 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 221 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lja4g3837 221 SUPERFAMILY RING/U-box 24 86 - -
Lja4g3837 221 SMART ring_2 27 73 IPR001841 -
Lja4g3837 221 CDD RING-HC_AtRMA_like 25 74 - -
Lja4g3837 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 87 IPR013083 -
Lja4g3837 221 ProSitePatterns Zinc finger RING-type signature. 42 51 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3837 Lja-Chr4 70959534 70960623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3837 23 207 C3H Transcription Factor Family AT4G27470 42.000 8.42e-37 127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3837 4 70959534 70960623 Lja6g3062 6 59401099 59403245 PCT