Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3835 ATGCAAAGTCATGAAGCAGAGAAACAAGAAGACGGTGATGGCCCACCGCCGGGGTGGCAACCAAAGAAAGAAGAAGACGACGATGGTCCACCGCCGGGGTGGCAAACAATCCTCACTCCGCCACCGTCACGTCCATCCGGTCTAGCTCAAATGGTTTGTGGTTCTTGTCGTCGCCTGCTTTCATATCCACGAGGTGCCAAACATGTCAAATGTTCATGTTGTCAGACTGTCAACATTGTATTAGAAGCTGATCAGGTTGGGCAAGTTAAGTGTGCGAGTTGTGCGGTATTGCTAATGTACCCTTATGGTGCTTCACAAGTTAGATGTTCTGCATGTCGATTTGTGACAGAAATCGGGGAACACAACAAGCGCCCTCCATGGTCTGTACAACAAAGGAAACCAACTCCTGCCCAAACTGGTTGTTAG 426 0.493 MQSHEAEKQEDGDGPPPGWQPKKEEDDDGPPPGWQTILTPPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCASCAVLLMYPYGASQVRCSACRFVTEIGEHNKRPPWSVQQRKPTPAQTGC* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3835 141 MobiDBLite consensus disorder prediction 1 30 - -
Lja4g3835 141 PANTHER PROTEIN LSD1 39 136 IPR040319 -
Lja4g3835 141 Pfam LSD1 zinc finger 53 77 IPR005735 -
Lja4g3835 141 Pfam LSD1 zinc finger 91 115 IPR005735 -
Lja4g3835 141 PANTHER PROTEIN LOL2 39 136 - -
Lja4g3835 141 MobiDBLite consensus disorder prediction 1 47 - -
Lja4g3835 141 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 88 116 IPR005735 -
Lja4g3835 141 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 50 80 IPR005735 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lja4g3835 zf-LSD1 3.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3835 - - gmx:100780865 231.491