Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3825 ATGAAGGACATGATTCTTGAATCCCTTTTACAAGCAGCATTCAAAGATTATTTACATAAGGAGGTCCCAAAATTTAAAAAGCCCTACATAGAAGAGGAGAAGAATGTTGAAATCCAAGAGAATGAAGGACATGTGAACCTCGACATCACTAAGTGCTTCGGGGAGACACGTGCCAATTTGTCTAAAACTATTGCAAAATATGAAGTGATGTTGAACCAAAACAAATCGCGTTGTTTAGGCTTCCCTGTTAATCAGGAAATTAACTATGACGCATTGACACCGTTGTTGCGCTACCACTTAAACAATGCTGGAGATCCATTTCTCGGAAGCGGTTATGGTCAAAATTCAGTAGAATTTGAAGTTTGTGTGCTTGATTGGTTTGCCAAACTATGGCAGATGGAGAAGGGCGAGTATTGGGGATATGTTACAACAGGTGGAACTGAAGGAAATTTACATGGAATTTTAATGGGGAGGGAAAAATTTCAAGACGGAATTTTATATACATCACAAAACTCGCATTATTCGTTATTCAAAATAGCGATGATGTACAGAATGCAATGTGTAAAGGTCAACACTTTGATTTCGGGTGAGATAGATTGTGCTCATTTCAAGAGCTTACTTCTATCTCACAAGGACAAACCAGCCATCGTCAACCTAAACATAGGAACAACTATGAAAGGAGCAATTGATGACATTGATCTCGTAATACAAACATTAGAGGAATGTGGATTTCCTCGTGATCGATTCTATATTCATTGTGATGGAGCTCTATCCGGAATAATGTTGCCGTTTCTTAAACAAGCTCCAAGGATTAACTTCAAGAAGCCCATTGGAAGTATATCTATTTCCGGCCATAAGTTCTTGGGATGCCCAATTCCTTGTGGTGTTATATTAACACGTTCAGAACACGTCAATGCTCTAGCTAGAGACGTTGAATATATTGAATCAAGGGATGTCACAATCACAGGCAGCCGTTGTGGGCTTGCGCCAATTTTCCTTTGGTATGCTCTCCAAGAAAGAGGTTTAATAGGACTTAAGAGAGAAGCGCAAATGTGCATCACAAATGCACGCTATTTGCTGGATAAACTTCATGGTAATAGTATTGGTGCAATGCGAAATGAGTTTAGTAATACCGTTGTATTTGAAAGGCCTCAAGATGATGACTTTGTGCGAAAGTGGAATTTGTCTTGTGAAGGAAATGTTGCACATGTGGTTGTGATGCAACATGTCACTACTGAAATGCTAGACTCATTTGTTAGTGAACTAGTTAACAAACGGTCTGTTTGGTTTCAAGATGGACTGAGAAAGTCTCCCTGCATTGCGAACAACATTGGAGATAAAAATTGTGCTTGTACATCGCATAATTCATTTTGA 1374 0.3901 MKDMILESLLQAAFKDYLHKEVPKFKKPYIEEEKNVEIQENEGHVNLDITKCFGETRANLSKTIAKYEVMLNQNKSRCLGFPVNQEINYDALTPLLRYHLNNAGDPFLGSGYGQNSVEFEVCVLDWFAKLWQMEKGEYWGYVTTGGTEGNLHGILMGREKFQDGILYTSQNSHYSLFKIAMMYRMQCVKVNTLISGEIDCAHFKSLLLSHKDKPAIVNLNIGTTMKGAIDDIDLVIQTLEECGFPRDRFYIHCDGALSGIMLPFLKQAPRINFKKPIGSISISGHKFLGCPIPCGVILTRSEHVNALARDVEYIESRDVTITGSRCGLAPIFLWYALQERGLIGLKREAQMCITNARYLLDKLHGNSIGAMRNEFSNTVVFERPQDDDFVRKWNLSCEGNVAHVVVMQHVTTEMLDSFVSELVNKRSVWFQDGLRKSPCIANNIGDKNCACTSHNSF* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3825 457 SUPERFAMILY PLP-dependent transferases 74 424 IPR015424 -
Lja4g3825 457 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 279 300 IPR021115 GO:0016831
Lja4g3825 457 PANTHER - 28 454 - -
Lja4g3825 457 Gene3D - 97 338 IPR015421 GO:0003824
Lja4g3825 457 Gene3D Aspartate Aminotransferase, domain 1 339 426 IPR015422 GO:0003824
Lja4g3825 457 Pfam Pyridoxal-dependent decarboxylase conserved domain 116 367 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lja4g3825 457 PANTHER SERINE DECARBOXYLASE 28 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3825 Lja-Chr4 70855502 70857758 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3825 221 355 Calmodulin-binding Proteins AT1G65960 27.517 3.54e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3825 K25193 - gmx:100784867 621.698