Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3824 ATGGATGAAGCTGGAAAATCGTGGGTGCGGAGGACGAATTACTCGCACACCGTGTGTCACCGGTTGAACTATTCGAGATCTTTCAACCTGCAGACAGAGGCAGTGCAGAGTTCAGGTCTGAAATCAAGGCCATCAGCATCTTCATTAGCAGCAGCAGCTCCTCCTCCTGTTGTTTCTAAGGTTTCACAGGTGCAGAAGAAGACTCCTGTGACGATGAAGCAGAGATCTTTGTCTCCTTTGCCGGCGACTTATGTCTCTGAAACCTTCAAGGAAGCCAGGCATGAACGGAAGAGGTTCTCGACTCCCGGTCCGCGGAGGAGTGTTGAGGATAAGAAAATCATGGGGAAGCTGCTGAACAAGGATTCTCATCATGTGTCGAATTCTAAATCCCCTACTTCCAGTCCAATGAAGATGTTTGCATCAATGAAAATAAGCGGCGGCAAGTCCAAGCACAAGGACTCTGGATGGACAAAGTATTTTGACCACGGCGGAGGGAAGGTAACTGCTGTGGAAACAGCTGAAGAATGGAATGTAGACCTCTCCAAGCTCTTTGTTGGTCTCAGGTTTGCTTATGGGGCTCACAGCAGGCTTTACCATGGCGTGTACGAGGGTGAAGCTGTTGCTGTAAAACTTATCAGGGTCCCGGATGATGACGAAAACGGAACGTTGGCTGCTCGATTAGAGAAACAATTCATCAGTGAAGTGACGCTTTTATCTCGCCTCCACCATGAAAATGTTATAAAGTTCATAGCAGCATGCAGAAAGCCACTTGTTTATTGTGTGATCACAGAATATCTATCGGAAGGTTCCTTCAGGGCCTATTTGCATAAGTTGGAGAAGAAAACAATTTCTCTACAAAAGCTGATTGCTTTTGCGCTGGATATGGCTCATGGAATGGAATATATACACTCTCAAGGTGTCATTCATCGAGACCTTAAACCAGAGAATATCCTTATCAATGGAGACTTTCGCCTTAAAATTGCTGATTTCGGCATTGCTTGTGAGGACGGATCCTGCGATTTACTTGCTGATGACCCTGGTACGTACCGCTGGATGGCGCCTGAGATGATCAAACGGAAATCCTATGGGAGGAAGGTTGATGTATACAGTTTCGGGCTTATCTTATGGGAAATGTTGACGGGGACATTACCATATGAGGATATGACTCCCATCCAGGCTGCTTTTGCAGTCGTAAATAAGAATTCAAGGCCTGTTATCCCTTCAAACTGCCCACCGGCTATGCGAGCTTTAATTGAGCAATGTTGGTCATTGAATCCAGACAAAAGGCCCGAGTTCTGGCAGGTTGTTAAGGTATTAGAGCAATTTGAATCTTCGCTCGCTCGCGATGGAACCTTGACCTTGGTGCAAAACCCTTGTTCCCAGGATCATAAAAAAGGGCTTCTTCATTGGATTCAAAAGCTTGGTCCTGTGCATCAAAGTAATGGTCCAATGCCTAAACCTAAATTTACATGA 1473 0.4589 MDEAGKSWVRRTNYSHTVCHRLNYSRSFNLQTEAVQSSGLKSRPSASSLAAAAPPPVVSKVSQVQKKTPVTMKQRSLSPLPATYVSETFKEARHERKRFSTPGPRRSVEDKKIMGKLLNKDSHHVSNSKSPTSSPMKMFASMKISGGKSKHKDSGWTKYFDHGGGKVTAVETAEEWNVDLSKLFVGLRFAYGAHSRLYHGVYEGEAVAVKLIRVPDDDENGTLAARLEKQFISEVTLLSRLHHENVIKFIAACRKPLVYCVITEYLSEGSFRAYLHKLEKKTISLQKLIAFALDMAHGMEYIHSQGVIHRDLKPENILINGDFRLKIADFGIACEDGSCDLLADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILWEMLTGTLPYEDMTPIQAAFAVVNKNSRPVIPSNCPPAMRALIEQCWSLNPDKRPEFWQVVKVLEQFESSLARDGTLTLVQNPCSQDHKKGLLHWIQKLGPVHQSNGPMPKPKFT* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3824 490 CDD STKc_MAP3K-like 192 439 - -
Lja4g3824 490 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 467 - -
Lja4g3824 490 MobiDBLite consensus disorder prediction 61 75 - -
Lja4g3824 490 PRINTS Tyrosine kinase catalytic domain signature 347 357 IPR001245 GO:0004672|GO:0006468
Lja4g3824 490 PRINTS Tyrosine kinase catalytic domain signature 366 388 IPR001245 GO:0004672|GO:0006468
Lja4g3824 490 PRINTS Tyrosine kinase catalytic domain signature 301 319 IPR001245 GO:0004672|GO:0006468
Lja4g3824 490 PRINTS Tyrosine kinase catalytic domain signature 410 432 IPR001245 GO:0004672|GO:0006468
Lja4g3824 490 PRINTS Tyrosine kinase catalytic domain signature 263 276 IPR001245 GO:0004672|GO:0006468
Lja4g3824 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672|GO:0006468
Lja4g3824 490 ProSiteProfiles Protein kinase domain profile. 183 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3824 490 SMART serkin_6 183 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3824 490 SUPERFAMILY Protein kinase-like (PK-like) 170 439 IPR011009 -
Lja4g3824 490 PANTHER TYROSINE KINASE FAMILY PROTEIN 3 467 - -
Lja4g3824 490 MobiDBLite consensus disorder prediction 46 75 - -
Lja4g3824 490 Pfam Protein tyrosine and serine/threonine kinase 192 439 IPR001245 GO:0004672|GO:0006468
Lja4g3824 490 Gene3D Transferase(Phosphotransferase) domain 1 268 469 - -
Lja4g3824 490 Gene3D Phosphorylase Kinase; domain 1 171 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3824 Lja-Chr4 70837322 70841476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3824 1 490 MAP Kinase Kinase Kinase AT5G58950 57.034 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lja4g3824 PK_Tyr_Ser-Thr 6.3e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3824 - - gmx:100784454 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3824 4 70837322 70841476 Lja6g3050 6 59295998 59298609 PCT