Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3819 ATGGCTACTGCATCTTCTGTAGTACCCTCCGCTGCTCTCTCCTCTCTCTCCCTCCGCTCCTCCTCATCCTTCTCCCTCCTCCCCTCAACCACCAAACTCCCCTTCTTCCCTCTCCTCACCAGACCCCTCCTCTCCACCACCTCCTCCACCACCGTCTCCTCCAAATGCAAACCCACCGACGACATTGACACCACCTTCTTCGACACCGCAAACCCAGAAGAAGACCTCCCCTTCAACCCACCAGAAATCCCCGAAGGCTTCGTCCCTCCTCCTTCCATCGACGACGGCCCCATCGAAACCGAGGACGAAATCGCCGCCGCGTATGAGGAAATCTACGGCCCTGCTTACAGCGGAGTGTCGGTTCTGGGTAATGACATCCACGTGATGGACTCGAAGGCGAAGAAGGATACTGGGTTCGGGTCGGGTGTGAAGAAGGAGAAGGTGAGAGATGGGTTTGAGGAGAGGGTGGTTCAGGTGAGGAGGATCACCAAGGTGGTTAAGGGAGGGAAGCAGTTGAAGTTCAGGGCGGTTGTGGTCGTCGGTGACAAGAAAGGTAATGTGGGTGTTGGTGTTGGCAAGGCCAAGGAGGTTGTAGCGGCGGTTCAGAAATCTGCTGTCAATGCTAGGAGGAACATTGTCAGTGTGCCTATGACTAAGTACTTGACTTTCCCACACAGATCTGATGGAGATTATGGAGCGGCAAAGGTGATGCTTAGACCTGCTTCTCCTGGTACTGGAGTTATTGCAGGTGGGGCTGTGAGAATTGTTCTTGAAATGGCAGGTGTTGAGAATGCTTTGGGAAAGCAACTAGGAAGTAATAATGCACTCAACAATGCCAGAGCAACTGTTGTTGCTGTGCAGAAAATGAGACAGTTCCGTGAGGTCGCTGAGGAACGTGGAATCCCAATGGAAGAGTTATGGAAGTGA 927 0.5318 MATASSVVPSAALSSLSLRSSSSFSLLPSTTKLPFFPLLTRPLLSTTSSTTVSSKCKPTDDIDTTFFDTANPEEDLPFNPPEIPEGFVPPPSIDDGPIETEDEIAAAYEEIYGPAYSGVSVLGNDIHVMDSKAKKDTGFGSGVKKEKVRDGFEERVVQVRRITKVVKGGKQLKFRAVVVVGDKKGNVGVGVGKAKEVVAAVQKSAVNARRNIVSVPMTKYLTFPHRSDGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFREVAEERGIPMEELWK* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3819 308 Hamap 30S ribosomal protein S5 [rpsE]. 129 305 IPR005712 GO:0003735|GO:0006412|GO:0015935
Lja4g3819 308 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 10 308 - -
Lja4g3819 308 SUPERFAMILY Ribosomal protein S5 domain 2-like 222 300 IPR020568 -
Lja4g3819 308 ProSiteProfiles S5 double stranded RNA-binding domain profile. 152 215 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja4g3819 308 TIGRFAM rpsE_bact: ribosomal protein uS5 151 305 IPR005712 GO:0003735|GO:0006412|GO:0015935
Lja4g3819 308 ProSitePatterns Ribosomal protein S5 signature. 169 201 IPR018192 -
Lja4g3819 308 PANTHER RIBOSOMAL S SUBUNIT 10 308 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja4g3819 308 SUPERFAMILY dsRNA-binding domain-like 148 217 - -
Lja4g3819 308 Gene3D - 147 213 - -
Lja4g3819 308 Pfam Ribosomal protein S5, C-terminal domain 229 299 IPR005324 GO:0003735|GO:0005840|GO:0006412
Lja4g3819 308 Pfam Ribosomal protein S5, N-terminal domain 152 216 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja4g3819 308 Gene3D - 219 307 IPR014721 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3819 152 292 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 30.872 1.33e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3819 K02988 - gmx:100787105 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3819 4 70744765 70747859 Lja4g3819 4 70744765 70747859 ECH