Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3818 ATGTTTCCTGCACCACCTTCTCCCTTAATCCCAGACCCAATCCCATACTTTCAGTTCCCACCATCTTCTCAGGCATCTTATCAAACATCTAACTTGCAATTTTCACCACCATATGAGGCCCCTTATCCAACCCTTAACCCGCATTTCCCATATATGGACGACATGAATACAATTCCGTTAGTGATGAACCATGCTTATAACAATGAGTATAATCCTATGTTACCTTTCCCGATGGAGCAGCAGTACAATGCCAACGTGCCTTTAATCATACAAGACTATCAACTTGAAGATCTCTCCCAACCCTTGGACGTGGAACAACCATTACTGCATAAAGAGGATGGGAAGGAAATTGTTGCAACTTTGACCAAAACTACAAGGGGCAAGAGAAGAGAACAAAATAAACAGAGGATCCGCAAAGTTTTCAATGCCCCAGATGGGAAGAAGCTCTTGGAAATTTTTACCAAAACATTAAAGAAGAGTGATGTTGGCAAGCTCAGGCGCATAGTTCTTCCAAAGAGGGAAGCTGAGGCAGAGCTTCCACAACTGTCAGAAAGTAAAGTAGCCACTACCATTTTACTTAAAGATGTATATTCTGAGCATCAATGGGCCTTGAGATATAGGTACTGGAGTAATAACAATAGTCGGATGTATGTTTTGGAGGGTGTAGGGGATTTGGTGAAGCATTATGGATTGAAAATGGGAGATTATATAACCCTTTACCAGGAAGAATCTAATGTTCTGGATGAAAATGCAGAAGCAACGGTACCCACTTCAAAAACAAAAGATGGAGAAGAAGAATCAACCTCGGCTGAAGAGATGAGATTTGATGAGATGGAAGAAGGTGGTGGCGATTCTTCAAGTGACGGAGGAGAAGACTTTAGAAGTGAACAACTCGGAAATGTGGAAGGGGTGTGGAACTGGGAAGCTAGGGCGGAAGAAACTAAAGAAGATGAAAAAATCTGGATGCAGCTACAAGCACCAATGACTGGTGATGACCTCATCGTGTACGGGGAGCTTGACAATATCGTGGATTTTGGAGATCGGTTTTCATCTTTCTGA 1059 0.424 MFPAPPSPLIPDPIPYFQFPPSSQASYQTSNLQFSPPYEAPYPTLNPHFPYMDDMNTIPLVMNHAYNNEYNPMLPFPMEQQYNANVPLIIQDYQLEDLSQPLDVEQPLLHKEDGKEIVATLTKTTRGKRREQNKQRIRKVFNAPDGKKLLEIFTKTLKKSDVGKLRRIVLPKREAEAELPQLSESKVATTILLKDVYSEHQWALRYRYWSNNNSRMYVLEGVGDLVKHYGLKMGDYITLYQEESNVLDENAEATVPTSKTKDGEEESTSAEEMRFDEMEEGGGDSSSDGGEDFRSEQLGNVEGVWNWEARAEETKEDEKIWMQLQAPMTGDDLIVYGELDNIVDFGDRFSSF* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3818 352 CDD B3_DNA 152 245 IPR003340 GO:0003677
Lja4g3818 352 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 121 265 IPR044800 GO:0003700
Lja4g3818 352 Gene3D - 142 260 IPR015300 -
Lja4g3818 352 ProSiteProfiles B3 DNA-binding domain profile. 153 261 IPR003340 GO:0003677
Lja4g3818 352 SMART B3_2 153 250 IPR003340 GO:0003677
Lja4g3818 352 MobiDBLite consensus disorder prediction 248 295 - -
Lja4g3818 352 MobiDBLite consensus disorder prediction 258 291 - -
Lja4g3818 352 Pfam B3 DNA binding domain 153 241 IPR003340 GO:0003677
Lja4g3818 352 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR LEC2 ISOFORM X1 121 265 - -
Lja4g3818 352 SUPERFAMILY DNA-binding pseudobarrel domain 152 244 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3818 Lja-Chr4 70737069 70739935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3818 145 247 B3 DNA Binding Superfamily AT1G28300 52.427 5.18e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja4g3818 B3 2.7e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3818 - - var:108339602 145.591