Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3817 ATGAAGTTTAACATTGCGAATCCCACCACTGGGTGCCAGAAGAAGCTCGAAATCGATGACGACCTCAAACTTCGTGCATTTTGGGACAAGAGGATCTCACAGGAGGTTCTTGGTGATGCTCTTGGTGAGGAATTTAAGGGCTATGTTTTCAAGATTACTGGTGGGTGTGACAAGCAAGGATTCCCAATGAAGCAGGGTGTGCTGACCCCTGGTCGTGTCCGACTCTTGCTTCACAGAGGAACTCCTTGTTTCCGTGGATACGGAAGGCGCAATGGAGAGCGCAGAAGGAAGTCTGTGCGTGGATGCATTGTCAGCCCTGACCTCTCTGTTTTGAACTTGGTGATTGTGAAGAAAGGTGATAATGATTTACCTGGTCTTACTGATGTTGAGAAACCAAGGATGAGGGGTCCAAAGAGAGCATCCAAAATTCGCAAGCTGTTCAACCTTTCAAAGGATGATGATGTGAGAAAGTATGTTAACACATACCGCCGAAACTTCACAACCAAAAATGGGAAAAAGGTAAGCAAAGCTCCCAAGATTCAACGTCTGGTCACTCCTTTGACACTCCAAAGGAAGCGAGCAAGAATTGCAGATAAGAAGAAGAGAATTGCTAAGGCTAAATCTGAGGCTGCTGAATATCAGAAGCTCCTTGCATCCAGGTTGAAGGAGCAGAGAGAACGCCGCAGTGAGAGCTTGGCAAAGAGAAGATCCAAACTGTCCACTGCTTCCAAGCCAACAGCATAG 744 0.4677 MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDVEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRNFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLSTASKPTA* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3817 247 PANTHER 40S RIBOSOMAL PROTEIN S6 1 246 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lja4g3817 247 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lja4g3817 247 MobiDBLite consensus disorder prediction 219 247 - -
Lja4g3817 247 Coils Coil 189 216 - -
Lja4g3817 247 MobiDBLite consensus disorder prediction 219 237 - -
Lja4g3817 247 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Lja4g3817 247 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lja4g3817 247 PIRSF RPS6e 1 247 IPR014401 GO:0003735|GO:0005840|GO:0006412
Lja4g3817 247 PANTHER 40S RIBOSOMAL PROTEIN S6 1 246 - -
Lja4g3817 247 Gene3D - 133 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3817 Lja-Chr4 70680726 70683363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3817 1 247 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 71.774 3.53e-118 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3817 K02991 - gmx:100786559 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3817 4 70680726 70683363 Lja6g3041 6 59211189 59213641 PCT