Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3814 ATGGATAGGTATGAGGGAAAGAGAACCTTGAGGTACAAAGAGTACGATGAGGAGGAAGAGGAAGAAGAAGAAGATGAAGAAGAAGAGGGTAGAAGAAAGAGAGTAGTTACAGATCTATATAGCAAGAGAGGGTCTAAAGGTGGAAGCTCAGTGCCACCTTCTTGTCAGGTGGAAAATTGTGATGCTGATCTAAGTGAGGCTAAGCAGTACCACCGGCGGCATAAGGTTTGTGAGTACCATGCCAAAGCTCATGCCGTACACATTGCAGGGATGCATCAACGGTTTTGCCAGCAATGTAGCAGATTCCATGAGCTATCAGAATTTGATGACTCTAAAAGGAGTTGTAGGAGGCGTCTGGCTGGGCATAATGAGAGGCGTCGCAAAAATGCAATTGACTATCATGGACAATGA 411 0.4526 MDRYEGKRTLRYKEYDEEEEEEEEDEEEEGRRKRVVTDLYSKRGSKGGSSVPPSCQVENCDADLSEAKQYHRRHKVCEYHAKAHAVHIAGMHQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNAIDYHGQ* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3814 136 MobiDBLite consensus disorder prediction 1 56 - -
Lja4g3814 136 Gene3D - 45 116 IPR036893 GO:0003677|GO:0005634
Lja4g3814 136 Pfam SBP domain 55 128 IPR004333 GO:0003677
Lja4g3814 136 SUPERFAMILY SBT domain 53 133 IPR036893 GO:0003677|GO:0005634
Lja4g3814 136 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 128 IPR044817 GO:0003677
Lja4g3814 136 MobiDBLite consensus disorder prediction 1 15 - -
Lja4g3814 136 ProSiteProfiles Zinc finger SBP-type profile. 52 129 IPR004333 GO:0003677
Lja4g3814 136 Coils Coil 12 32 - -
Lja4g3814 136 PIRSF SBP 1 136 IPR017238 GO:0003677|GO:0003700|GO:0009908
Lja4g3814 136 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 15 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3814 Lja-Chr4 70648106 70651269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3814 48 132 SBP-box Gene Family AT2G33810 71.765 1.41e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lja4g3814 SBP 4.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3814 - - gmx:100527199 196.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3814 4 70648106 70651269 Lja4g3814 4 70648106 70651269 ECH
Lja6g3038 6 59184461 59186142 Lja4g3814 4 70648106 70651269 ECH
Lja3g4835 3 90379302 90381019 Lja4g3814 4 70648106 70651269 ECH
Lja3g1290 3 13519987 13521138 Lja4g3814 4 70648106 70651269 ECH
Lja4g3814 4 70648106 70651269 Lja6g3038 6 59184461 59186142 PCT