Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3813 ATGGCCGAGATTTCAACTTCTGCTGCGTACAAGGAATATGTCGCTGGCTTGCTCGCCGGAGTTGCCGCCGTAGCCACTGGTCACCCCTTTGACACCGTGAAGGTGAAGCTGCAAAAGCACAATACTGAAGGAAATATAATTCGTTACAAAAATGGATTGCATTGCACTTCTAGAATATTGCAGACCGAAGGAATTAAAGGACTTTATAGAGGTGCTACATCATCTTTTGCCGGGATGGCTTTGGAAGGATCCCTTTTTTTTGGCATGTATTCCCAGACAAAACAATACCTTCAGGGGGGTGTTCAAAGCGGTGAACCTCGGCCTCAAGTGATAATACCAGCTGCAGCTTTTAGCGGCGCCATCAACAGTTTCGTGCTTTGTCCAACAGAGCTGTTAAAGTGTAGGATGCAGATCCAAGGCACTGACTCTCTGGTTCCGATGTCGAGTAGATACAGTAGTCCCCTTGATTGTGCCCTCAAAACAGTAAAAAACGAAGGGGTGACAGGAATTTTTCGGGGAGGTTGTGCTACATTGCTTAGAGAATCTATGGGGAATGCTACCTTTTTCAGTGTATATGAATATATGCGTTACCACTTGCATTCACGTATCAAACCTGCTTCTTCTGATTACAGCGGCCTGATTGACATTGGAATTGGGATCGTTACAGGTGGCGTTAGTGGTATTGCTTTTTGGTTAGCAGTTTTGCCCCTTGATGTGGCAAAAACTCTGATTCAGACAAACCCTGATAAAAACTCTCAAAGGAATCCTTTTGTGATTTTGAGTTCAATCTACAAAAGGGCTGGATTGAAAGGGTGTTATACAGGTCTCGGTCCCACATTAAGTCGAGCATTTCCTGCTAATGCAGCAACAATTGTCACCTGGGAGCTAGCATTGAAAATGTTAGGCATTAAACATGACTGA 921 0.4441 MAEISTSAAYKEYVAGLLAGVAAVATGHPFDTVKVKLQKHNTEGNIIRYKNGLHCTSRILQTEGIKGLYRGATSSFAGMALEGSLFFGMYSQTKQYLQGGVQSGEPRPQVIIPAAAFSGAINSFVLCPTELLKCRMQIQGTDSLVPMSSRYSSPLDCALKTVKNEGVTGIFRGGCATLLRESMGNATFFSVYEYMRYHLHSRIKPASSDYSGLIDIGIGIVTGGVSGIAFWLAVLPLDVAKTLIQTNPDKNSQRNPFVILSSIYKRAGLKGCYTGLGPTLSRAFPANAATIVTWELALKMLGIKHD* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3813 306 Pfam Mitochondrial carrier protein 220 301 IPR018108 -
Lja4g3813 306 Pfam Mitochondrial carrier protein 114 199 IPR018108 -
Lja4g3813 306 Pfam Mitochondrial carrier protein 9 98 IPR018108 -
Lja4g3813 306 Gene3D Mitochondrial carrier domain 112 305 IPR023395 -
Lja4g3813 306 Gene3D Mitochondrial carrier domain 3 111 IPR023395 -
Lja4g3813 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 7 96 IPR018108 -
Lja4g3813 306 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 133 305 - -
Lja4g3813 306 PANTHER - 133 305 - -
Lja4g3813 306 SUPERFAMILY Mitochondrial carrier 10 295 IPR023395 -
Lja4g3813 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 214 300 IPR018108 -
Lja4g3813 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 106 198 IPR018108 -
Lja4g3813 306 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 6 133 - -
Lja4g3813 306 PANTHER - 6 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3813 Lja-Chr4 70627071 70633616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3813 26 301 Antiporters AT1G79900 28.159 1.87e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3813 K15109 - gmx:100815087 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3813 4 70627071 70633616 Lja4g3813 4 70627071 70633616 ECH