Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3808 ATGGCTTTTACTGCTGGGCCTTTCCATCCCCTTTGCATTCTAAGAACTGGAAAGGATACATGGAAAGTTAAGGTTCGTGTTCTTCGTCAGTGGGAGATGTTTCCTGTTGGTGAGCCTTCCAAACCATATGCGTTGAATCTCGTCTTTGTTGATTCAGAGGGTGTAAAAATTGAAGCTTGCATTAAGAAGAACTATCTTACAAAGTTTAGGGGTGAATTTTCAGAGGGTAATGTGTACAAGATAACTTATTTTGGCATTTCTGAAAACTCTGGTGGTTTTCGTGCTTCTGAACATGAGCTGAAGATTTTCTTCAATCAGAGAACAAGAGTAGTGCTGGAACATTGTGATGTTATTCCAACTCTTTGTTTATCACTGAAGAACTCAACTTACATTGAGGCAACAATGGGGGAATGTGATTATCTCATTGATTTTATTGGGTTAGTTGCTGCCGTTTCAAGGGAGAAGCAGTATGTTAAGTCTGGTAAAGTCACAAGGAAGATTGAGCTTGACCTCATTGATGAAAAGGGAATTGTCAGATGTGCCCTATTTGGTGATTATGTGGACATTGTTCTCGAATATTTGGCTCTTGAACGGAATGGATTACCAGTGTTGGTTGTGCAGCTTGCTAAGATAAAGTCATTTAGGGGTGATATTGTTATTCAGAATGTGATGAATGGCACCAAACTTCTGTGGAATCCTAATATTCCTGAAGCTGTTTCATTTAGGAATGGTTTGGTTGCGAATGGAATTGACTTTAATGTTCCTATTGGTGTTATTGAGGGTGGTGTTCCATATGTTCCTCTTGAAGAAGACTTTTTAACAATGTTTCCAAAGAAGAGTATTAAAGAATTGCAATCTACAGCTGAGGAGGGTGTATTCGTAGTATTTGCTAAGGTTAGCGGTTTGCTTGATGGGGAGAGGTGGTTTTATCAATCGTGCCGCTGTCACAAAGCTGTAACCATTGAAGATGATATGTATTATTGTGGAAGCTGCAAAACCTTTGTGCTTGAAGTTATTCCAAGGTTCCGGATTAAAGTTGAAGTTTGTGAGGGTGAAGAGACTGCCACATTTGTTCTATTTGACACTGATAGTCAACATATATTGCAAAAGAGCTGCAAGGATTTAGTTGCTGTTTGGAAGGGCAAGGTTGTGGGTGAATATCCTGATGCTATCAAGGCGATTGTTGGGAATGAGTATCTTTTTAAAGTTGAGAAGGAATTTGATCATGGAGTGAAGTATGATGGTTCTTTTAAAGTGAAGAAGATCTGTGATAATATTGCTGTGATTGAAAAGTTCAAGGACAATAATGCAGTTCAAACTCCTAAGAAGTTGATCAGAGAAACATTTGTTTCAAAATGTGATTCTGGATCAAATGAACGTTCAATGGGTGACAATATAGCTGATTCTTCTGCTGAACTATCAGAAATTGGACCAAGCACAGCTTCACTTGATGATATATCGCCAGTTGAATGTTCTTCTGTGCTTTCTTCTGTTGGGAGTGATATTGGCCATGTTGCAAGTGGACCGAGGGCTTCCAAAAGGATGAGGATAAGGAATATTAAGTACGATGTTTAG 1575 0.3892 MAFTAGPFHPLCILRTGKDTWKVKVRVLRQWEMFPVGEPSKPYALNLVFVDSEGVKIEACIKKNYLTKFRGEFSEGNVYKITYFGISENSGGFRASEHELKIFFNQRTRVVLEHCDVIPTLCLSLKNSTYIEATMGECDYLIDFIGLVAAVSREKQYVKSGKVTRKIELDLIDEKGIVRCALFGDYVDIVLEYLALERNGLPVLVVQLAKIKSFRGDIVIQNVMNGTKLLWNPNIPEAVSFRNGLVANGIDFNVPIGVIEGGVPYVPLEEDFLTMFPKKSIKELQSTAEEGVFVVFAKVSGLLDGERWFYQSCRCHKAVTIEDDMYYCGSCKTFVLEVIPRFRIKVEVCEGEETATFVLFDTDSQHILQKSCKDLVAVWKGKVVGEYPDAIKAIVGNEYLFKVEKEFDHGVKYDGSFKVKKICDNIAVIEKFKDNNAVQTPKKLIRETFVSKCDSGSNERSMGDNIADSSAELSEIGPSTASLDDISPVECSSVLSSVGSDIGHVASGPRASKRMRIRNIKYDV* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3808 524 CDD RPA1_DBD_C 278 403 IPR013955 -
Lja4g3808 524 Gene3D - 7 114 IPR012340 -
Lja4g3808 524 SUPERFAMILY Nucleic acid-binding proteins 135 245 IPR012340 -
Lja4g3808 524 SUPERFAMILY Nucleic acid-binding proteins 280 427 IPR012340 -
Lja4g3808 524 Gene3D - 273 434 IPR012340 -
Lja4g3808 524 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 25 376 - -
Lja4g3808 524 Gene3D - 118 252 IPR012340 -
Lja4g3808 524 CDD RPA1_DBD_B_like 143 242 - -
Lja4g3808 524 PANTHER REPLICATION FACTOR A 1, RFA1 25 376 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja4g3808 524 SUPERFAMILY Nucleic acid-binding proteins 7 111 IPR012340 -
Lja4g3808 524 CDD RPA1_DBD_A_like 22 110 - -
Lja4g3808 524 Pfam Replication factor-A C terminal domain 302 421 IPR013955 -
Lja4g3808 524 Pfam Domain of unknown function DUF223 47 112 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3808 Lja-Chr4 70568105 70572143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3808 9 403 Core DNA Replication Machinery Family AT5G08020 23.188 1.25e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3808 - - lja:Lj6g3v0884310.1 665.611