Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3801 ATGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATCACTCTCGAAGTTGAGAGTTCAGATACCATAGACAATGTGAAGGCTAAAATTCAAGATAAGGAAGGGATCCCACCGGACCAGCAGCGTCTCATTTTTGCTGGCAAGCAGCTGGAGGATGGGCGTACCCTTGCTGATTACAACATCCAAAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGTGGTGGAATGCAGATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCTGACACCATTGACAATGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCAGACCAGCAGAGGCTCATATTCGCTGGCAAACAGCTTGAGGATGACAGAACATTGGCTGATTACAACATTCAGAAAGAGTCCACCCTCCACCTTGTGTTGCGACTCCGTGGTGGTATGCAGATTTTTGTGAAGACCCTTACTGGCAAGACAATTACTTTGGAGGTAGAGAGCTCAGACACAATTGACAATGTGAAGGCCAAAATTCAAGACAAAGAGGGCATCCCACCAGACCAACAGAGGCTCATCTTTGCTGGTAAACAGCTTGAAGATGGCAGAACCTTGGCCGACTACAACATTCAGAAAGAGTCCACCCTACACTTGGTGCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTCAAGACCCTCACAGGAAAGACAATCACCCTTGAGGTGGAGAGTTCTGACACCATTGACAATGTGAAGGCCAAAATTCAAGACAAGGAGGGTATTCCCCCAGATCAGCAAAGGCTTATTTTCGCGGGCAAACAACTTGAGGATGGCCGAACTCTGGCAGATTATAACATCCAGAAAGAGTCAACTCTCCACCTTGTGTTGCGACTCCGTGGTGGTATGCAGATTTTCGTGAAAACCCTTACTGGCAAGACTATTACTTTAGAGGTAGAGAGCTCGGACACAATTGACAATGTGAAGGCCAAAATCCAGGATAAGGAGGGTATTCCCCCAGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTGGCTGACTACAACATTCAGAAAGAGTCTACCCTCCATTTGGTGCTCCGTCTTCGTGGTGGTATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGTTCTGACACCATCGACAACGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCACCAGACCAACAGAGGCTCATCTTTGCTGGCAAACAGCTTGAGGATGGCAGAACTTTGGCTGATTACAACATTCAGAAAGAGTCCACCCTCCACCTTATGCAAATCTTTGTCAAGACCCTTACTGGCAAGACCATTACTCTTGAAGTTGAGAGTTCAGATACCATAGACAATGTGAAGGCTAAAATTCAAGATAAGGAAGGGATCCCACCGGACCAGCAGCGTCTCATTTTTTCTGGCAAGCAGCTGGAGGATGGGCTCCAACTTGTAGAAGTTGTTAATTGTCCAACCCTCCACTTGGTGCTCCGTCTTCGTGGTGGTATGCAAATTTTTGTGAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCTGACACAATTGACAATGTGAAGGCCAAAATTCAAGACAAAGAGGGCATCCCACCAGACCAACAGAGGCTCATCTTTGCTGGTAAACAGCTTGAAGATGGCAGAACCTTGGCCGACTACAACATTCGGAAAGAGTCCACCCTACACTTGGTGCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTCAAGACCCTCATAGGAAAGACAATCACCCTTGAGGTGGAGAGAGGGTATCCCCCAGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTGGCTGACTACAACATTCAGAAAGAGTCTACCCTCCATTTGGTGCTCCGTCTTCGTGGTGGTATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACAATCACCCTTGAGGTGGAGAGTTCTGACACCATCGACAATGTGAAGGCTAAAATTCAAGACAAAGAAGGCATTCCACCAGACCAACAGAGGCTCATCTTTGCTGGCAAACAGCTTGAGGATGGCAGAACTTTGGCTGATTACAACATTCAGAAAGAGTCCACCCTCCACCTTGTCCTTCGTTTGAGGGGTGGTTATTAA 2214 0.4743 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFSGKQLEDGLQLVEVVNCPTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIRKESTLHLVLRLRGGMQIFVKTLIGKTITLEVERGYPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGY* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3801 737 PANTHER UBIQUITIN 1 206 - -
Lja4g3801 737 PANTHER UBIQUITIN 619 736 - -
Lja4g3801 737 PANTHER UBIQUITIN 450 617 - -
Lja4g3801 737 PANTHER UBIQUITIN 152 359 - -
Lja4g3801 737 PANTHER UBIQUITIN 229 434 - -
Lja4g3801 737 Gene3D - 153 228 - -
Lja4g3801 737 Gene3D - 1 76 - -
Lja4g3801 737 Gene3D - 305 381 - -
Lja4g3801 737 Gene3D - 525 599 - -
Lja4g3801 737 Gene3D - 450 524 - -
Lja4g3801 737 Gene3D - 229 304 - -
Lja4g3801 737 Gene3D - 600 660 - -
Lja4g3801 737 Gene3D - 77 152 - -
Lja4g3801 737 Gene3D - 661 737 - -
Lja4g3801 737 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Lja4g3801 737 SUPERFAMILY Ubiquitin-like 228 304 IPR029071 -
Lja4g3801 737 SUPERFAMILY Ubiquitin-like 152 228 IPR029071 -
Lja4g3801 737 ProSiteProfiles Ubiquitin domain profile. 614 660 IPR000626 GO:0005515
Lja4g3801 737 CDD Ubl_ubiquitin 77 152 - -
Lja4g3801 737 PRINTS Ubiquitin signature 32 52 IPR019956 -
Lja4g3801 737 PRINTS Ubiquitin signature 11 31 IPR019956 -
Lja4g3801 737 PRINTS Ubiquitin signature 53 74 IPR019956 -
Lja4g3801 737 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Lja4g3801 737 ProSitePatterns Ubiquitin domain signature. 407 432 IPR019954 -
Lja4g3801 737 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Lja4g3801 737 CDD Ubl_ubiquitin 229 304 - -
Lja4g3801 737 SUPERFAMILY Ubiquitin-like 599 660 IPR029071 -
Lja4g3801 737 PANTHER UBIQUITIN 380 449 - -
Lja4g3801 737 ProSiteProfiles Ubiquitin domain profile. 305 380 IPR000626 GO:0005515
Lja4g3801 737 PANTHER UBIQUITIN 13 450 617 - -
Lja4g3801 737 PANTHER UBIQUITIN 13 152 359 - -
Lja4g3801 737 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Lja4g3801 737 ProSiteProfiles Ubiquitin domain profile. 381 450 IPR000626 GO:0005515
Lja4g3801 737 ProSiteProfiles Ubiquitin domain profile. 229 304 IPR000626 GO:0005515
Lja4g3801 737 ProSiteProfiles Ubiquitin domain profile. 661 736 IPR000626 GO:0005515
Lja4g3801 737 SMART ubq_7 600 656 IPR000626 GO:0005515
Lja4g3801 737 SMART ubq_7 229 300 IPR000626 GO:0005515
Lja4g3801 737 SMART ubq_7 77 148 IPR000626 GO:0005515
Lja4g3801 737 SMART ubq_7 305 376 IPR000626 GO:0005515
Lja4g3801 737 SMART ubq_7 524 595 IPR000626 GO:0005515
Lja4g3801 737 SMART ubq_7 1 72 IPR000626 GO:0005515
Lja4g3801 737 SMART ubq_7 661 732 IPR000626 GO:0005515
Lja4g3801 737 SMART ubq_7 381 452 IPR000626 GO:0005515
Lja4g3801 737 SMART ubq_7 453 519 IPR000626 GO:0005515
Lja4g3801 737 SMART ubq_7 153 224 IPR000626 GO:0005515
Lja4g3801 737 ProSitePatterns Ubiquitin domain signature. 255 280 IPR019954 -
Lja4g3801 737 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Lja4g3801 737 Gene3D - 382 449 - -
Lja4g3801 737 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Lja4g3801 737 PANTHER UBIQUITIN 13 1 206 - -
Lja4g3801 737 PANTHER UBIQUITIN 13 75 282 - -
Lja4g3801 737 SUPERFAMILY Ubiquitin-like 304 380 IPR029071 -
Lja4g3801 737 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Lja4g3801 737 ProSitePatterns Ubiquitin domain signature. 550 575 IPR019954 -
Lja4g3801 737 CDD Ubl_ubiquitin 661 736 - -
Lja4g3801 737 PANTHER UBIQUITIN 13 619 736 - -
Lja4g3801 737 PANTHER UBIQUITIN 13 229 434 - -
Lja4g3801 737 ProSiteProfiles Ubiquitin domain profile. 524 599 IPR000626 GO:0005515
Lja4g3801 737 PANTHER UBIQUITIN 75 282 - -
Lja4g3801 737 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Lja4g3801 737 CDD Ubl_ubiquitin 1 76 - -
Lja4g3801 737 CDD Ubl_ubiquitin 153 228 - -
Lja4g3801 737 ProSitePatterns Ubiquitin domain signature. 687 712 IPR019954 -
Lja4g3801 737 SUPERFAMILY Ubiquitin-like 380 450 IPR029071 -
Lja4g3801 737 ProSiteProfiles Ubiquitin domain profile. 450 523 IPR000626 GO:0005515
Lja4g3801 737 SUPERFAMILY Ubiquitin-like 660 736 IPR029071 -
Lja4g3801 737 PANTHER UBIQUITIN 13 380 449 - -
Lja4g3801 737 SUPERFAMILY Ubiquitin-like 450 523 IPR029071 -
Lja4g3801 737 CDD Ubl_ubiquitin 524 599 - -
Lja4g3801 737 Pfam Ubiquitin family 452 521 IPR000626 GO:0005515
Lja4g3801 737 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Lja4g3801 737 Pfam Ubiquitin family 526 597 IPR000626 GO:0005515
Lja4g3801 737 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Lja4g3801 737 Pfam Ubiquitin family 307 378 IPR000626 GO:0005515
Lja4g3801 737 Pfam Ubiquitin family 663 734 IPR000626 GO:0005515
Lja4g3801 737 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Lja4g3801 737 Pfam Ubiquitin family 383 450 IPR000626 GO:0005515
Lja4g3801 737 Pfam Ubiquitin family 231 302 IPR000626 GO:0005515
Lja4g3801 737 Pfam Ubiquitin family 615 658 IPR000626 GO:0005515
Lja4g3801 737 SUPERFAMILY Ubiquitin-like 509 599 IPR029071 -
Lja4g3801 737 CDD Ubl_ubiquitin 305 380 - -
Lja4g3801 737 ProSitePatterns Ubiquitin domain signature. 331 356 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3801 Lja-Chr4 70485452 70498880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3801 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 2.46e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3801 K08770 - csin:114305206 1367.44