Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3799 ATGGCTGGGTCTGGAAATGGGCCGGGAGGGCCACCACCACTGTGGACAACAATTCCTCCTAGCATCACTATCCCGCCACCAATTGCATGGACGGAGGATGATGGGTTTAGCCTTGATCTCATGAGGATGACAGAGGATGATGGGTTTAGCCCTGATCTCATGAGGATGACAGAGGATGATGGGTTTAGCCCTGATCTTATGAGGATGACGGAGGATGATGACTTTAGCCCTGATCTCATGGATGATCTTCTTTCTGGCCATACAAATCAGTGTCCATCTATGTCGGAGATCCTAACCAATGGTGGCATGGCAGAGCACAACCACAATGCTCTTTTTGGGAATAATAATCAGTATTCTCTGTTCGGCGTTTCACAGGGGTTCAGCTCATATGAGTTCCTCAGTTCACCTTTACCTCAGGAGCACATTGGAATGCCAAAACAGCAGGCGCAACCACAGGTTTCTACCTCATTCACACCGGTTGTTGCAGCTACTTCCAGTAGTTCTCAACAAGTGTTACTACCCGGAATGTTAGTAATGCCGGAGTTTCTTCAACAAGGATTGAATTCTTCTCCTATAAATGTTGCAGCTACTTCCAGTAGTTCTCAACAAGTGTTACTGCCCAGAATGTCATCAGTAATGCCAGAGTTTCTTCAACAAGGATTGAATTCTTCTCCTGTAAATGTTGCAGCTACTTCCAGTAGTTCTCAACAAGTGTTACTACCCAGAATGTCAGTAATGCCAGAGTTTCTTCAACAAGGATTGAATTATTCTCATGTAAATGTTGATAATTGCTCTAACGATGGATACAACTGGAAGAAGTATGGGGAAGATCGAGTGAAAGATTTTTTGTTCACGCGAATTTATTATCAGTGCACTCAACAAGATTGTCCTGCTATGAAGAAGGTTAAGCATTCTCTTGATGGTGATTTCACGCAAGTCACTTATAAATACAAGCACAATCATCAACCTCTTCATCCAAGCATGGTCACAAATGTGCAAGGAACAAGTGATAGGAAGGATGTAGGTGATCATGAAATTCAAGTGATTGAGAAAAATGGTGAACCTAATCTCAACAGAAGAAACATTGGAGGCAGTCTTGTAGATCCAGGATCTTCACGTGGCAAAGTATCAGCGTCTAGACTCGTGGTGCAAACAATAAGTGATGTGGATATTGTATATGATGGGTATAAATGGTGCAAGTATGGGCAAAAAATTATCAAAGGAAACTCAAATCCAAGGAGCTATTACAAATGCAACATCCCAGGATGCAATGTTAGGAAGTATGTTGAGAGGGCTCCAACCGATCCTAGAGTCGTGTTAACAGCATATGAAGGAAAACATAATCATCATGCACCAATAGCGCATTAA 1368 0.4262 MAGSGNGPGGPPPLWTTIPPSITIPPPIAWTEDDGFSLDLMRMTEDDGFSPDLMRMTEDDGFSPDLMRMTEDDDFSPDLMDDLLSGHTNQCPSMSEILTNGGMAEHNHNALFGNNNQYSLFGVSQGFSSYEFLSSPLPQEHIGMPKQQAQPQVSTSFTPVVAATSSSSQQVLLPGMLVMPEFLQQGLNSSPINVAATSSSSQQVLLPRMSSVMPEFLQQGLNSSPVNVAATSSSSQQVLLPRMSVMPEFLQQGLNYSHVNVDNCSNDGYNWKKYGEDRVKDFLFTRIYYQCTQQDCPAMKKVKHSLDGDFTQVTYKYKHNHQPLHPSMVTNVQGTSDRKDVGDHEIQVIEKNGEPNLNRRNIGGSLVDPGSSRGKVSASRLVVQTISDVDIVYDGYKWCKYGQKIIKGNSNPRSYYKCNIPGCNVRKYVERAPTDPRVVLTAYEGKHNHHAPIAH* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3799 455 SMART WRKY_cls 392 451 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g3799 455 SMART WRKY_cls 265 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g3799 455 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 66 326 - -
Lja4g3799 455 Gene3D WRKY domain 255 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g3799 455 Gene3D WRKY domain 376 453 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g3799 455 Pfam WRKY DNA -binding domain 266 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g3799 455 Pfam WRKY DNA -binding domain 394 449 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g3799 455 ProSiteProfiles WRKY domain profile. 260 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g3799 455 ProSiteProfiles WRKY domain profile. 387 452 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g3799 455 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 330 454 - -
Lja4g3799 455 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 66 326 IPR044810 GO:0003700
Lja4g3799 455 SUPERFAMILY WRKY DNA-binding domain 264 322 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g3799 455 SUPERFAMILY WRKY DNA-binding domain 384 452 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g3799 455 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 330 454 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3799 Lja-Chr4 70465742 70468732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3799 259 452 WRKY Transcription Factor Family AT1G13960 40.891 3.27e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja4g3799 WRKY 6.4e-21 CL0274