Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3797 ATGGATTCTGACTTCTGGACCTCGCGTCTTGCCGCCGCCAAACGCCAATATACTCTCCAGCATCACCATCCAAGCTCCCATTTAGATCGGTTGGGAGTCGATGATTTTGATGTGGAAGAAGAGGTGCGACCAGATTTCCCTTGCCCGTATTGTTATGAAGACTTTGACATCGCTTCCTTGTGTTCTCATCTTGAAGATGAACATTCCTGTGAATCAAGAGTCACGATTTGTCCTATATGCTCAGTTAAAGTTGCACGGGACATGTTGAGTCACATAACGCTGCAACATGGGCACTTGTTTAAGATACAGAGAAGGCGCAGGTTAAGAAGAGTTGCTATTCCAAACAGTCAGACATTGTCTCTTTTAGGTCGAGATCTTCGCGAGGCTCATTTGCAGGTGCTTCTTGGTGGTAGTGGTGCAGGACATCGGTCATACAGAGACACAGTGTCCAATGCAGCTACTGATCCATTCCTATCCTCTTTTATGTTGAATTTCCCTGCTTGTGAAGCAGAAGAGATTTCTAAATCTGTGGTATCGAGTGCTGAAGATTCTGCTGCAAAGAGTACAGCACCTGCACATATTTGGAAATCAAGTTTTGATCCCTCCTTGAGTATTGAAGAGCGAGAGAAAAGGATAAGACAAGCTGCTGGGAGATCTGGTTTTGTGCAGGATTTGTTTCTTTCAACTTTGTTCAACGACTAA 702 0.4459 MDSDFWTSRLAAAKRQYTLQHHHPSSHLDRLGVDDFDVEEEVRPDFPCPYCYEDFDIASLCSHLEDEHSCESRVTICPICSVKVARDMLSHITLQHGHLFKIQRRRRLRRVAIPNSQTLSLLGRDLREAHLQVLLGGSGAGHRSYRDTVSNAATDPFLSSFMLNFPACEAEEISKSVVSSAEDSAAKSTAPAHIWKSSFDPSLSIEEREKRIRQAAGRSGFVQDLFLSTLFND* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3797 233 Pfam Drought induced 19 protein (Di19), zinc-binding 45 97 IPR008598 -
Lja4g3797 233 Pfam Stress-induced protein Di19, C-terminal 119 230 IPR027935 -
Lja4g3797 233 PANTHER PROTEIN DEHYDRATION-INDUCED 19 1 232 - -
Lja4g3797 233 PANTHER PROTEIN DEHYDRATION-INDUCED 19 1 232 IPR033347 -
Lja4g3797 233 SUPERFAMILY TRAF domain-like 46 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3797 Lja-Chr4 70404552 70408545 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja4g3797 Di19_C 1.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3797 - - gmx:100792230 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3797 4 70404552 70408545 Lja4g3797 4 70404552 70408545 ECH