Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3788 ATGGAGGGCGAGGCCGGTTCGGAAGGAGATAGTAATCGGAAAAGGGGTAGCGCAGATGATAACAGCGATGAGAATAGGAACGAGGGAAGCAATAGCAAGATTGCGAATTCGAATGATGGTCAGGGCAAGCCCAAGCGTCAGATGAAGACACCCTTTCAGCTTGAAACCCTTGAGAAAGCTTATGCATTGGATAAATTCCCTTCGGAGGAGGTGAGGGTGGAGTTGTCTCAGAAGTTGGGGTTGTTGGATCGGCAGCTTCAGATGTGGTTCTGCCATAGGAGATTGAAGGACAAGAAGGAAATGGCGCTGAAGAAGCAGCCGCAGAAGGTGGAGGTGGAGCCTTTGCCGGATTCTCCTGTGGATAACCTAAGGTTGGGCCCTGAACTTGGTAATGGGTATGCTTCCGGGTCAGGGTCAGGTTCGAGTCCGTTTACACGTTTGGAGCCCCGGAATGGGGTTTCCCGGGGCATGCCCGGTTATTACGAGTCTCCACAAGCTGTAATGGAGCGTAGAGCTATTGCTTGTGTGGAGGCACAGTTAGGGGAGCCATTGAGAGATGATGGACCCACTCTAGGAGTCGAGTTTGATCCATTGCCGCCAGGTGCTTTTGGCACACCGATAGCGGTTACAGAGCACCAGAAGCTTCCTAGTCCTTCCTATGACAGTAAAATATATGGAAGACATGATGTTAGAACTAATAAGGCTATGGCAAAGACATTCCAGTCTCGCAGCAGGCCTGATGCTTTTGGACAGTTTAGGCAATCTCATTTACATGATCTGATGGAGGACCCTGCCAGAAATCCCTCTGTTGCACCTGTGCTTGAGCAGCTACCGAGAATTCATGTTACCCAAGGTCAGTCTTCTCGTGTTCGTCTATCGTCTCAACAAGACAGACAAGGGAGTTCATTTCAGTCTCCTCCTCTACCTGATGATGTTAACCCCCTAGCGGAATTGTACACAAACATAACTAATGGGGGAATGAACTCTCACTTCACTGATCACCAAATGGTTGGGCCAGAAAATGCATATGCTTTACCTTCTGGACAACTTTTGCATGACAATGCAGTTCGGATCGATAGGAAACGAAAGAGTGATGATCCCCGAAGTGCAAAGGACGTTGAAGCCCATGAGATAAAGATCCGGAAAGAGCTTGAGAAACAAGAGAGCCATAGACGGAAGAATGAAGAGAGAATGAAGAAAGAGATGGAGAGACAAGATCGTGAAAGAAGGAAGGAAGAAGAGAGATTGATGCGTGAGAGACAGCGAGAAGAGGAAAGAGCAAAACGTGAGGAAAAGCGTGAAATTGAACGTAGGGAGAAGTTTTTGCTGAAAGAGAATTTAAAAGCTGAGAAAATAAGGCAAAAAGAAGAGCTTCGCAAAGAGAAAGAGGCAGAGAGAAGAAAAGCTGCCCTTGAAAAGGCAACTGCCCGTAGAATAGCTAAGGAATCTATGGAGCTTATTGAAGACGAACAGTTGGAAATGATGGAGTTGGCTGCCTCAAGCAAGGGGTTGTCCTCTATTATCCATCTTGATTTTGATACTTTGCAAAACCTGGAATCATTTAGGGATTCATTGAGTGTCTTCCCACCTGAGCGTATAAAGCTGAGAAAACCATTTGCTATCCAGCCCTGGATCAACTCAGAAGAGAACATTGGCAACCTTCTCATGGTTTGGAGATTTTTGATTACCTTTGCTGATGTTCTGGAGCTATGGCCTTTTACTCTTGATGAATTTGTGCAAGCATTTCACGACTATGATTCAAGATTGTTGGGTGAGATACATGTTGCACTTCTTAAGGTGATAATAAAAGACATCGAAGATGTTGCAAGGACACCCTGTACAGGATTAGGAATGAATCAGAATGGTGCTGCTAATTCTGGAGGTGGCCATCCAGAGATTGTGGAGGGGGCATATGCATGGGGCTTTGACATACGAAATTGGCATAGACACTTAAATCAGTTGACATGGCCAGAAATTTTCCGGGAGCTTGCATTATCAGCAGGATATGGGCCACAGTTGAAGAAAAGTATCACACTGTCAAATACAAATGATAAAGTCGAGGGAGAGAATTGTGAAGATATAATTTCTACACTTCGTAACGGTTCAGCAGTAGAAAATGCAGTGGCAAAAATGCAGGCCAGAGGTTTATTAGCTCCTAGAAGATCTAGGCATCGGTTAACTCCTGGAACTGTTAAGTTTGCGGCCTTTCATGTTCTCTCGCTCGAGGGTAGCAAGGGGTTGACAGTACTAGAACTTGCAGAAAAAATTCAGAAATCTGGTCTTCGGGACCTGACAACCAGCAAGACTCCTGAGGCATCAATTTCTGTTGCTTTGACAAGAGATACCAAGCTTTTCGAAAGAATTGCTCCATCAACATACTGTGTACGTGCTGCATTCAGGAAGGATCCCGCTGATGCTGAGTCCATTATTTCTGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTCTCTAGCTGGGGAAGATGCTGATGATGTTGAAAGAGAAGAGTCAGAAAGTGATGAAGTTGATGAGGATCCTGAAGTTGATGATTTGGTAAATCCTTCGAGTGCTAACAGACCATCTGAACAGTGTGATGACTTCTTATCAAATGGAAAAGAAAATTTGGTTCCTGATATAGAACTTAAAGATGAGTTTGATAAGGATCTGCCTTATTTTCCTGAGAATGGTTCCAAGAATGCTGATTGTCCAAGTTCTGTCACTGCACAACCTGTTGCTTGTGAAGATCTGAATGCTGGAAATCTTGGTGACGAAAATATGGAAATTGATGAAAGCAATTCTGGAGAGTCATGGGTTCAAGGGCTTACAGACGGAGAATATTCTGATCTCAGTGTAGAGGAGCGTTTAAATGCTCTTGTTGTATTAGTTGGGGTTGCAAATGAAGGCAATTCAATCCGTGTTGTTCTTGAGGATCGATTGGAAGCAGCGAATGCTCTGAAGAAGCAAATGTTGGCAGAAGCACAGATAGATAAAGTTCGTTTGAAAGAGGATAATTTTAATAAATCAGATTTTCTATCTATCAATGGGAATAAAGTTGAGGAGGGAAAACAAAGCCCATTGCTTGACACTAATATTGGGAATAATAATAATGAGGCATCTCCCAGCACTGCAGAAAATCAGAAAGCTGCTCCGCTTGCACTAAGCATGTCTACTGAAAAACCCTCATCAGTTCAAGACCTCTGCACAGTTCTAGAGAACCCTCACAGTCAACTATCTGCACAATTTTCAAAAAGGTCGCGTTCTCAGTTGAAGTCTTACATTTCACACATAGCAGAAGAAATGCATGTCTACAGATCATTGCCCCTTGGGCAAGACCGCAGACGTAATCGATATTGGCAATTTGTTGCATCTGCTTCTTGCAATGATCCTGGCTCTGGCAGGATATTTGTTGAATATCATGATGGCAAATGGAGGCTCATTGATTCTGAAGAGGCCTTTGATGCACTTTTGAATTCCTTGGACTCGCGTGGGATCAGGGAATCTCATTTGCGCTTAATGTTGCAAAAGATTGAGAATTCCTTTAAGGAAAATGTTCGAAATAATACTCTATGTGCCAAAAGTGGAAGCAGAGCTGAAACTTTCATTAAAAACGAAGCTGATGAAACAGATTCCAGTCCTGATCCCCGTACTGAATCGGACAGTCCTAGCAGTACTCTCTGTGGCTTGAACTCTGATGCTTCAGAAACTTCATCATCCTTCAAAATTGAGCTCGGTAAAAGTGAGAGTGAGAAGAAAGCTGCCTTGAGAAGGTATCAAGATTTTCAAAAATGGATGTGGAAAGAATGCTATAACTCATCAATATTATGTGCAATGAAATATGGGAAAAAGAGATGCAAACCTCAGGTTGACATCTGTGATATCTGTCACAACACTTACTTCTTTGAAGACTCCCATTGTAATAGTTGCCACCGTACTTTTCCCTCCAACAATGAATTTAATTTTTCTAAACATGCATTTCAATGTGGAGACAAGTTATCCACTGAAATTTGCACTTTGGATTCTTCTCTTCCCATACGTACAAGATTTCTTAAGGCCCTGCTAGCTTTAATTGAGGCATCTGTTCCACTTGAAGCATTTCAATCAATTTGGACGGAAGATATTAGGAGGCATTGGGGTATGAAATTGAGCAAATCATCTTCTGTTGCAGAACTTCTACAGATATTGACCCTATTTGAGAGCGCATTGAAACGAGACTTTATATCATCAACCTTCTCTACAACAGAGGAATTGTTGGGGTTGAGCACAACGTCAGAATGCCCTATGGATCCTGAATTGGTTTCGGTGGTTCCATGGGTTCCACGGACCACTGCGGCTGTGTCTCTCAGACTTCTTGAGTTTGATGCATCCGTTATGTATGTACAGCAACCTGAGCCCCGTGGGGAGAAAGAAGTATATGCTAAGCTTCCTTCAAGATATAATCCTGTCAAATCTAGTAAAGTTGTTGAACCAGCAAACTTGGATGCTTCTATGAAAATTGTGGGAAGCAGCAATAAACAGAGATGCGTGAGCAATGATAAAGGACGGGGCAAAAAGCTATCTAAAAGAATGCATGATTCCAATCGAGATAGTGGCCGCCGGAATGTCAAGGTCTCTGGGAATCCAAGTCAAAGAAAGAAACAGCAAGGACAACAATCTGAAAGACAGGCTGGTGTACGTGGCCGCCGGACAGTCAGGAAAAGGAGATCGGAGAAGAGGGATGTTGAAGATTTGTTGCTGGGCCATAAGACTGCTACTCACAACGCCAGTATTGGTGGAGAGTCATTGAGATTGTTTGATGAGGACTGGGATGATGAAAAAGAAAGTCCCATGACTCCCATCCACATGGGGGCTCCTGACATTAGTAACAACACTGAAGTGGCTGAATCTGATGACAATGTCCAAGTAGGTGAATCTGATGACAATGTCCAAGGAGTGGAATCTGATGACAGTGACCAAGCAGTGGAATCTGATGACAATGGCCAAGCAATGGAATCGGATGATGATGTCGAAGCAGTGGAGTATGATCAAGGAAACTGGGAGATAGGTTTTCATGGCACCCCTAACAGATGGAGTAGGGATATGGCTGGAATGATTGATGAAGATGTGGAAGCTTCTGAAGATGACAATGACAATCGCGTTGAAGAGAATGAAGAGGAGGAATTAGAAGAGGCAGACGATGATTCAGATGGTATGGTAAATGGAGTTATAAATGAAGAAAGCTCAGACTCAGCTATGTCTGATGATTCTTCTGATTAG 5256 0.4344 MEGEAGSEGDSNRKRGSADDNSDENRNEGSNSKIANSNDGQGKPKRQMKTPFQLETLEKAYALDKFPSEEVRVELSQKLGLLDRQLQMWFCHRRLKDKKEMALKKQPQKVEVEPLPDSPVDNLRLGPELGNGYASGSGSGSSPFTRLEPRNGVSRGMPGYYESPQAVMERRAIACVEAQLGEPLRDDGPTLGVEFDPLPPGAFGTPIAVTEHQKLPSPSYDSKIYGRHDVRTNKAMAKTFQSRSRPDAFGQFRQSHLHDLMEDPARNPSVAPVLEQLPRIHVTQGQSSRVRLSSQQDRQGSSFQSPPLPDDVNPLAELYTNITNGGMNSHFTDHQMVGPENAYALPSGQLLHDNAVRIDRKRKSDDPRSAKDVEAHEIKIRKELEKQESHRRKNEERMKKEMERQDRERRKEEERLMRERQREEERAKREEKREIERREKFLLKENLKAEKIRQKEELRKEKEAERRKAALEKATARRIAKESMELIEDEQLEMMELAASSKGLSSIIHLDFDTLQNLESFRDSLSVFPPERIKLRKPFAIQPWINSEENIGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPCTGLGMNQNGAANSGGGHPEIVEGAYAWGFDIRNWHRHLNQLTWPEIFRELALSAGYGPQLKKSITLSNTNDKVEGENCEDIISTLRNGSAVENAVAKMQARGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRAAFRKDPADAESIISEARKKIQIFENGSLAGEDADDVEREESESDEVDEDPEVDDLVNPSSANRPSEQCDDFLSNGKENLVPDIELKDEFDKDLPYFPENGSKNADCPSSVTAQPVACEDLNAGNLGDENMEIDESNSGESWVQGLTDGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALKKQMLAEAQIDKVRLKEDNFNKSDFLSINGNKVEEGKQSPLLDTNIGNNNNEASPSTAENQKAAPLALSMSTEKPSSVQDLCTVLENPHSQLSAQFSKRSRSQLKSYISHIAEEMHVYRSLPLGQDRRRNRYWQFVASASCNDPGSGRIFVEYHDGKWRLIDSEEAFDALLNSLDSRGIRESHLRLMLQKIENSFKENVRNNTLCAKSGSRAETFIKNEADETDSSPDPRTESDSPSSTLCGLNSDASETSSSFKIELGKSESEKKAALRRYQDFQKWMWKECYNSSILCAMKYGKKRCKPQVDICDICHNTYFFEDSHCNSCHRTFPSNNEFNFSKHAFQCGDKLSTEICTLDSSLPIRTRFLKALLALIEASVPLEAFQSIWTEDIRRHWGMKLSKSSSVAELLQILTLFESALKRDFISSTFSTTEELLGLSTTSECPMDPELVSVVPWVPRTTAAVSLRLLEFDASVMYVQQPEPRGEKEVYAKLPSRYNPVKSSKVVEPANLDASMKIVGSSNKQRCVSNDKGRGKKLSKRMHDSNRDSGRRNVKVSGNPSQRKKQQGQQSERQAGVRGRRTVRKRRSEKRDVEDLLLGHKTATHNASIGGESLRLFDEDWDDEKESPMTPIHMGAPDISNNTEVAESDDNVQVGESDDNVQGVESDDSDQAVESDDNGQAMESDDDVEAVEYDQGNWEIGFHGTPNRWSRDMAGMIDEDVEASEDDNDNRVEENEEEELEEADDDSDGMVNGVINEESSDSAMSDDSSD* 1752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3788 1751 MobiDBLite consensus disorder prediction 1533 1557 - -
Lja4g3788 1751 MobiDBLite consensus disorder prediction 28 44 - -
Lja4g3788 1751 MobiDBLite consensus disorder prediction 1510 1532 - -
Lja4g3788 1751 Coils Coil 444 475 - -
Lja4g3788 1751 Coils Coil 1702 1724 - -
Lja4g3788 1751 MobiDBLite consensus disorder prediction 1022 1050 - -
Lja4g3788 1751 PANTHER HOMEOBOX DOMAIN PROTEIN 12 1751 - -
Lja4g3788 1751 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 934 977 IPR028942 -
Lja4g3788 1751 MobiDBLite consensus disorder prediction 1203 1233 - -
Lja4g3788 1751 MobiDBLite consensus disorder prediction 1628 1751 - -
Lja4g3788 1751 SMART HOX_1 42 104 IPR001356 GO:0003677
Lja4g3788 1751 ProSiteProfiles 'Homeobox' domain profile. 40 100 IPR001356 GO:0003677
Lja4g3788 1751 ProSiteProfiles DDT domain profile. 548 607 IPR018501 -
Lja4g3788 1751 Coils Coil 973 993 - -
Lja4g3788 1751 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1105 1177 IPR028941 -
Lja4g3788 1751 MobiDBLite consensus disorder prediction 1 27 - -
Lja4g3788 1751 ProSiteProfiles HARE-type HTH domain profile. 729 798 IPR007759 GO:0006355
Lja4g3788 1751 SMART testlast3 548 607 IPR018501 -
Lja4g3788 1751 Pfam Homeodomain 43 99 IPR001356 GO:0003677
Lja4g3788 1751 MobiDBLite consensus disorder prediction 1216 1233 - -
Lja4g3788 1751 MobiDBLite consensus disorder prediction 1642 1674 - -
Lja4g3788 1751 MobiDBLite consensus disorder prediction 100 158 - -
Lja4g3788 1751 Pfam HB1, ASXL, restriction endonuclease HTH domain 729 797 IPR007759 GO:0006355
Lja4g3788 1751 MobiDBLite consensus disorder prediction 1604 1623 - -
Lja4g3788 1751 MobiDBLite consensus disorder prediction 1500 1578 - -
Lja4g3788 1751 Coils Coil 384 438 - -
Lja4g3788 1751 MobiDBLite consensus disorder prediction 855 869 - -
Lja4g3788 1751 MobiDBLite consensus disorder prediction 1700 1729 - -
Lja4g3788 1751 MobiDBLite consensus disorder prediction 283 314 - -
Lja4g3788 1751 MobiDBLite consensus disorder prediction 824 871 - -
Lja4g3788 1751 CDD homeodomain 45 101 IPR001356 GO:0003677
Lja4g3788 1751 MobiDBLite consensus disorder prediction 830 851 - -
Lja4g3788 1751 MobiDBLite consensus disorder prediction 1 53 - -
Lja4g3788 1751 MobiDBLite consensus disorder prediction 134 148 - -
Lja4g3788 1751 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 12 1751 IPR044977 GO:0006357
Lja4g3788 1751 MobiDBLite consensus disorder prediction 283 308 - -
Lja4g3788 1751 Gene3D - 27 102 - -
Lja4g3788 1751 MobiDBLite consensus disorder prediction 359 431 - -
Lja4g3788 1751 MobiDBLite consensus disorder prediction 1027 1050 - -
Lja4g3788 1751 Pfam DDT domain 549 604 IPR018501 -
Lja4g3788 1751 SUPERFAMILY Homeodomain-like 36 102 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3788 Lja-Chr4 70211255 70221506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3788 4 1661 Homeobox Transcription Factor Family AT1G28420 48.380 0.0 1337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lja4g3788 WSD 1.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3788 - - lja:Lj4g3v0473640.1 2415.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3788 4 70211255 70221506 Lja4g3788 4 70211255 70221506 ECH
Lja4g3788 4 70211255 70221506 Lja6g3019 6 58988871 59000805 PCT