Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3781 ATGTCCAAAGAGATCATGACATGGCATAGTGACTCAGATCCTGAGGAGAGGGGCATTGAACTCATCACACCCACCATAGTTGTTAATGACACAAAACCAAGCCAAATTCGAACCATAACCTGCCCCTCATGTGGTACTAACATTGAATTACAAGATCAGGCTGGAATCAATGACTTGCCGGGGTTACCAGCTGGGGTGAGGTTTGATCCGAATGATCAGGAGATACTTCAACATTTGGAAGCGAAGGTGCTATCCGATGTGCGCAAGCTTCATCCGCTTATTGATGAGTTCATACCAACGCTTGAAGGAGAGAATGGGATCTGTTACACGCACCCAGAGAAGCTACCAGGTGTAAGCAAAGATGGACAGATCCGCCACTTCTTCCACACACCTTCGAAAGCGTACACAACCGGCACAAGGAAAAGAAGAAAGGTCCATACTGACGAAGAAGGAAGCGAGACAAGATGGCACAAAACAGGCAAAACAAGACCGGTTTTCGCCGGCGGCGGCATAGTGAAGGGCTTCAAAAAGATACTGGTCTTGTACACCAACTACGGAAGGCAAAAGAAGCCCGAGAAGACCAATTGGGTGATGCATCAATACCATCTCGGCAGCAATGAAGAAGAGAAAGATGGAGAGTTAGTGGTTTCAAAGGTCTTCTACCAAACACAACCTCGGCAATGTGGGACTAATTCCATTACCAAGGATCCTTATGAGAAAGTTATACTGACTAGCCAAAACCAAAGTGTCCATGATGATGATAATTTAGCTCTGAAAAATGCAGCTCTTGTGGATTACTACCATCATCCTTTCATGAATTATGATCATGTGGGTCATAATATGGATAGCTCGTCTCAGCTTATTCCAAACTTCGTTGTGCAAGGTGATAGCTCTTCTTTCATTCGGTTAGCAATGGATGCAAACAAAGCCAGGTTTGAGAGGAAATAG 948 0.4494 MSKEIMTWHSDSDPEERGIELITPTIVVNDTKPSQIRTITCPSCGTNIELQDQAGINDLPGLPAGVRFDPNDQEILQHLEAKVLSDVRKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGQIRHFFHTPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRPVFAGGGIVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSNEEEKDGELVVSKVFYQTQPRQCGTNSITKDPYEKVILTSQNQSVHDDDNLALKNAALVDYYHHPFMNYDHVGHNMDSSSQLIPNFVVQGDSSSFIRLAMDANKARFERK* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3781 315 Pfam No apical meristem (NAM) protein 63 203 IPR003441 GO:0003677|GO:0006355
Lja4g3781 315 ProSiteProfiles NAC domain profile. 62 222 IPR003441 GO:0003677|GO:0006355
Lja4g3781 315 SUPERFAMILY NAC domain 58 222 IPR036093 GO:0003677|GO:0006355
Lja4g3781 315 MobiDBLite consensus disorder prediction 135 157 - -
Lja4g3781 315 MobiDBLite consensus disorder prediction 141 157 - -
Lja4g3781 315 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 6 299 IPR044799 GO:0003700
Lja4g3781 315 Gene3D NAC domain 71 226 IPR036093 GO:0003677|GO:0006355
Lja4g3781 315 PANTHER NAC DOMAIN-CONTAINING PROTEIN 10 6 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3781 Lja-Chr4 70098140 70101260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3781 6 229 NAC Transcription Factor Family AT4G28500 71.053 2.78e-116 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja4g3781 NAM 4.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3781 - - gmx:100795920 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3781 4 70098140 70101260 Lja4g3781 4 70098140 70101260 ECH