Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3767 ATGGCTAGCTCAGATGATGATTCATTTATTAATTCAGACGATGGTAGAGATCTTGATAATAATTCTGATAGTAATTGTGACGAAAGTGGTAGTGAAGGAGACAATGAAGCGGACAATGAGCAACCAGTCTTATATACAACACATGTCGGTCACAAAAAGATAGTCGATCTAACGGTCGATGATATACTTGGTCTAAAGTTCAGCCGACAAGAGGAAGCTTATAAATTTTATTCTGCATATGCAAAACTGCATGGGTTTGTTGTGAGAAAAGACATTCGAAGGCGAGATGAAAATGGTGACTTTATTGTTCAGCAGTATGTATGTAACAAAGAGGGATTGAGGAATAAAAAGCATTTGATGAGGGTGGATAGGAAAATGGATCATAGACCACTCACTCGTACGGGCTGTCATGCTAAGCTACGGGTACGCTTTGATTACAAGATATCTTGTTGGAAAGTGGTTTCTTTTAAGGAGGGTCATAACCATGAACTATACCCGGCAAGTGCAGTTCCTTTAATCCCTGCTTACCGTGCGATCAGTGACGCTGATAAAGCTCAGGTGGATAGCTTGAATTCACAAGGTGTCAAAACTTGTCATATTATGGGTTACTTGTTGGCACAGAAAGGGGGATATGCAGGTGTTGGTTTTCTGAAAGAGGATTTATACAATTATTTTCACCGCCAAAAGCGTGATAAGATCAAAGATGGGGATGCACGAATTAGCTTAACTTATCTTCAAGGAAAGGCAGACAATGATGGCATGTTTTTTTCAAGATACACCACTACGGATGATTGTAGACTCCAGAATCTATTTTGGGCAGATAGCACTAGCATAACAGATTTTCAATGCTTTGGTGATGTCCTTGCTTTTGATACCACGTACAATAAGAACAAATATAATCTTCCCCTTGTTATATTCAGTGGATGTAATCATCATTCGCAAACTGTTATTTTTGGTTGTGGTTTGTTAATCAATGAAACTGCAGAGACATATAAGTGGGTGTTAGAAACCTTTTTGGCAGCAATGCGCAATAAGCACCCAAGAGCTGTGGTGACAGATGGTGATAGTGCTATGAGGAAGGCCATCAAGCAGGTATTTCCGAATGCAACACATCGACTTTGTGCTTGGCACTTACACAGAAATGCAAAAGGTAAAACAATGAATGATTCATTTGTGGATGATTTCGAAAAAGCGTTGTATCATAATATGGGCATTGATGAATTCGAAGAGTTTTGGAAGCAGATGGTTGCCAAACATGGGCTTGAAGGAAACGAATGGGTTCGTAAGACTTATGAGAAAAAGTCAATGTGGGCCAATGCATATCTTCGTGATCAGTTTTTTGCTGGTATACGGACTACGTCACGATGTGAAGGAATTAATTCCTATATAAAGTCATATGTTGAGAGAAAAAATAGCGTCGTTGAGCTCTTGCATAGTATGGAGGAAGCATTGAGAGGATATAGACACAACGAGCTTGTTGCTGATTTTAATTCTCTTTTTACTGAACCGGTTATGACCACTTCTCTCCACATGTACGAGCGGGAGGCTTCAAAAATTTTCACATTAGAGATTTTCAGAGAAGTCAAATTTGAGATTGAAGAGGTAGGTGCATTAATGATCATGGAGCGGATAGAAAATGGAGACAGTGTAATGTTTAAGATGAGTAAATTGTTTCAACCCAATAGGATTATTGGTGTTGTTTATGATACTGTGAATTCTTCATTCTCATGTGACTGTCGTCTATTTCAGTCCCGTGGCATTCCATGCTCTCATGTTTTTTGTGCCATGAAACGTGAGCACATGAAATCAATTCCTAGCAGTCTTATTTGCAAACGGTGGACAAAATCTGTCAAGAGTGAGTTCATCTCATCAGATCAATTAGATGAAATGGATCCTGATGTAACCAAAATTACCCGCCGTGGGGCTGCAGCTGCTGCATGTAATAGGCTTTGTGAGATTGCATCAGAAAATGGTAAGTACTTCGATGAAATCAGAGATGAAATCTTAAAGTTGACTTCTAAGTATGACAACAAAAAGGGGTCAAGTAGAACTCAAGGTGATAATTTTAATGATATTCGTGATCCCACTACGGTACCGACAAAAGGCGGCCGTCCTTCAAAGAAGCGGTACAGTAGGACGAGAAGAAGATGTACAAATTGTAGAAAGACTGGACATACATTGAGGACATGTCCCAAGCGCATTGGTACAAAAGATGAGCATATTGCGCATGATGCATCATCACCTCATGAGGATAATGAGATGAGAAGACAAGATAATGAGGACAACACAACATTTAATGATGACAATGTCCAGCACAATGATCACAGTACCCAATATTCAAACTATGCTGAAAATGATAAAGAGGGAACAACACTCAATGAATGCAATATCAAACACAAGGACACAGAGCCGAGTAGTAAGAAAGGAAAAGAAAGAAAGGAAAAGAAAGTTAAACGTTCCACACAAAATTCAATCAATGACTCTGGAAAGCAACCCACTTTGTCTGCTCAGAGACCGCATCTAGAAGCTTATAAAGTTCAACAAACTGGTCTCACAACCCATCATACTGGAAAACAACCTATTTCTTCAGCTCAAAAACCGCATTCGGAAACTCATAAAGTCCAACACACTGGTCACACAATCCATCATATTGGAAAACAAACCATTGATTTTTCCAATAAAGGGAATCCGGAAATTACTCATCGGGTATTGGTTGCACCCCCACCCCCACCGGGGAATGTTGCATTTGCTTATGGCACATCAAACTCACACCTAACATCTTCAAATGATTATGGCACATCAAGCATACCCCATAACATACCATCTGGTTATGGTGCCCTAATCCAGGGGATGCCTATGCCTCCCTTACCATCTAGTTATGGTGCACTTAGTCATGAGATGCCTATGCCTCCCTTTCACGGTGCAGGTCCTTCACGCCCCCAATTTCCCAAATTCCTTGCCGCAATTCACATGTCACAGTATATGGGTGGAGTGCAAAATCTTCATGGTGGTACAAACTTGAGTCATTTGCTTCAAAAAGAAGTAAAAAAAAAAAATTGGAACAAGTAA 3069 0.3992 MASSDDDSFINSDDGRDLDNNSDSNCDESGSEGDNEADNEQPVLYTTHVGHKKIVDLTVDDILGLKFSRQEEAYKFYSAYAKLHGFVVRKDIRRRDENGDFIVQQYVCNKEGLRNKKHLMRVDRKMDHRPLTRTGCHAKLRVRFDYKISCWKVVSFKEGHNHELYPASAVPLIPAYRAISDADKAQVDSLNSQGVKTCHIMGYLLAQKGGYAGVGFLKEDLYNYFHRQKRDKIKDGDARISLTYLQGKADNDGMFFSRYTTTDDCRLQNLFWADSTSITDFQCFGDVLAFDTTYNKNKYNLPLVIFSGCNHHSQTVIFGCGLLINETAETYKWVLETFLAAMRNKHPRAVVTDGDSAMRKAIKQVFPNATHRLCAWHLHRNAKGKTMNDSFVDDFEKALYHNMGIDEFEEFWKQMVAKHGLEGNEWVRKTYEKKSMWANAYLRDQFFAGIRTTSRCEGINSYIKSYVERKNSVVELLHSMEEALRGYRHNELVADFNSLFTEPVMTTSLHMYEREASKIFTLEIFREVKFEIEEVGALMIMERIENGDSVMFKMSKLFQPNRIIGVVYDTVNSSFSCDCRLFQSRGIPCSHVFCAMKREHMKSIPSSLICKRWTKSVKSEFISSDQLDEMDPDVTKITRRGAAAAACNRLCEIASENGKYFDEIRDEILKLTSKYDNKKGSSRTQGDNFNDIRDPTTVPTKGGRPSKKRYSRTRRRCTNCRKTGHTLRTCPKRIGTKDEHIAHDASSPHEDNEMRRQDNEDNTTFNDDNVQHNDHSTQYSNYAENDKEGTTLNECNIKHKDTEPSSKKGKERKEKKVKRSTQNSINDSGKQPTLSAQRPHLEAYKVQQTGLTTHHTGKQPISSAQKPHSETHKVQHTGHTIHHIGKQTIDFSNKGNPEITHRVLVAPPPPPGNVAFAYGTSNSHLTSSNDYGTSSIPHNIPSGYGALIQGMPMPPLPSSYGALSHEMPMPPFHGAGPSRPQFPKFLAAIHMSQYMGGVQNLHGGTNLSHLLQKEVKKKNWNK* 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3767 1022 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 61 695 IPR031052 GO:0006355
Lja4g3767 1022 SUPERFAMILY Retrovirus zinc finger-like domains 702 740 IPR036875 GO:0003676|GO:0008270
Lja4g3767 1022 MobiDBLite consensus disorder prediction 9 23 - -
Lja4g3767 1022 MobiDBLite consensus disorder prediction 791 821 - -
Lja4g3767 1022 ProSiteProfiles Zinc finger SWIM-type profile. 562 600 IPR007527 GO:0008270
Lja4g3767 1022 Pfam FAR1 DNA-binding domain 75 165 IPR004330 -
Lja4g3767 1022 MobiDBLite consensus disorder prediction 677 838 - -
Lja4g3767 1022 PANTHER OS02G0262500 PROTEIN 61 695 - -
Lja4g3767 1022 Pfam MULE transposase domain 287 381 IPR018289 -
Lja4g3767 1022 MobiDBLite consensus disorder prediction 851 880 - -
Lja4g3767 1022 MobiDBLite consensus disorder prediction 731 768 - -
Lja4g3767 1022 ProSiteProfiles Zinc finger CCHC-type profile. 715 732 IPR001878 GO:0003676|GO:0008270
Lja4g3767 1022 MobiDBLite consensus disorder prediction 851 868 - -
Lja4g3767 1022 MobiDBLite consensus disorder prediction 769 790 - -
Lja4g3767 1022 MobiDBLite consensus disorder prediction 1 39 - -
Lja4g3767 1022 SMART 26again6 575 602 IPR006564 GO:0008270
Lja4g3767 1022 MobiDBLite consensus disorder prediction 705 728 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3767 Lja-Chr4 69871333 69879007 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja4g3767 MULE 3.6e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3767 - - ccaj:109792835 828.165