Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3752 ATGGCTGCCTCCAACAAAAGCTGGCCAAGCATGTTCAAGTCCAAGCGCAACCCCAACCACCAATGGCACCATGACATCAATTCCTCTCTCTTGTCCACCGGTTTCCAAAGAACCCCTTATGCCTCAGGAGGGGATGAGAGAACTCCAGAACCAAGGCCAAGATGGAACCCAAAACCAGAGCAAATCTGCATTCTGGAAGCCATCTTCAACTCTGGCATGGTTAACCCTCCAAGGGATGAAATAAGAAAGATCAGAATGCAGCTGCAGGAGTATGGTCAAGTTGGTGATGCCAATGTCTTCTACTGGTTCCAGAACCGTAAATCCAGAAGCAAACACAAACTCCGCAACCAACAGAATTCAAAGAAAAACAACAACAACCAAGAACCACAGAAAATTAACCAAACTGTGCCTAATTCATCATCTTCTTCATCATCTGAGAAATCCACTCCAAAGGAAGTAACAGTAACACCCTCTGTGGGATTCTTCTCAAACGTCATTGATGTGGTGCCTAATTCACCCACACCCTCTGTGAACCAGACTCTTTTTCAAACCAATTTTCAGCTCCCACCAGTTGCTGATCCTTTCTCCTTTGCTATGAACCAAGAAGTAGTGGTTCATAATGTCATGGAAACACAAGGATTTCACTTCACTGAGCTCTCAAACATAATCCAACCTCCTCCATCTCAATATGAACAGAATCTTGGTCAGTGGCTTACTACTACTAATAACATCATGAGCTTTGAAACCACAAAGAAAGACCAAGACAACTTCATGACCATGATGCACCAACCACAACACAACTTTTCTCTCACTCCAGCTCCAACTTTTGCTCCTCCTAGCACTAACACACTTGTTAGTGTTCCATCCCCCATCACTCAGCTTCAAGAAATAATGATTCGGTGTGTGTCAGGTGTAGTTGATGGTGGTGGTACCGCGAAATGCACAGTGTTCATTAACGACGTCGCAGTGGAGGTTGCTGTGGGGCCCATCAACGTGCCTGAAGCATTCGGGGAAGAAGCCATGCTCATCCACTCCTCCGGCATTCCTGTTCTCACCGACGAGTGGGGATTCACCCTCCACCCTCTTTAA 1089 0.4601 MAASNKSWPSMFKSKRNPNHQWHHDINSSLLSTGFQRTPYASGGDERTPEPRPRWNPKPEQICILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRKSRSKHKLRNQQNSKKNNNNQEPQKINQTVPNSSSSSSSEKSTPKEVTVTPSVGFFSNVIDVVPNSPTPSVNQTLFQTNFQLPPVADPFSFAMNQEVVVHNVMETQGFHFTELSNIIQPPPSQYEQNLGQWLTTTNNIMSFETTKKDQDNFMTMMHQPQHNFSLTPAPTFAPPSTNTLVSVPSPITQLQEIMIRCVSGVVDGGGTAKCTVFINDVAVEVAVGPINVPEAFGEEAMLIHSSGIPVLTDEWGFTLHPL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3752 362 MobiDBLite consensus disorder prediction 1 57 - -
Lja4g3752 362 MobiDBLite consensus disorder prediction 1 16 - -
Lja4g3752 362 MobiDBLite consensus disorder prediction 23 39 - -
Lja4g3752 362 MobiDBLite consensus disorder prediction 119 152 - -
Lja4g3752 362 SMART HOX_1 50 117 IPR001356 GO:0003677
Lja4g3752 362 Gene3D - 43 131 - -
Lja4g3752 362 CDD homeodomain 51 113 IPR001356 GO:0003677
Lja4g3752 362 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 362 IPR044557 GO:0003700|GO:0050793
Lja4g3752 362 SUPERFAMILY Homeodomain-like 45 116 IPR009057 -
Lja4g3752 362 Pfam Homeodomain 52 112 IPR001356 GO:0003677
Lja4g3752 362 MobiDBLite consensus disorder prediction 109 152 - -
Lja4g3752 362 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 362 - -
Lja4g3752 362 ProSiteProfiles 'Homeobox' domain profile. 48 113 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3752 Lja-Chr4 69560655 69563098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3752 1 362 Wox Gene Family AT5G45980 36.436 2.56e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lja4g3752 Homeodomain 4.3e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3752 4 69560655 69563098 Lja4g3752 4 69560655 69563098 ECH