Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3749 ATGAGCAATGGCGGCGCCAATCGCCCTGCATGCGCTGCTTGCAGGCAACAAAGGAGAAAGTGCAATGAACAATGTATTTTTGCTCCTTATTTCCCACCCACCAGTGCTCGAGAGTTTGAAGCGGTTCACAAGGTTTTTGGTGTCAGCAACATAACCAAGGTGCTTACAAACCTTGATGAACAAGGCAGAAGAGAAGCCATCAACTCTTTTCAATGGGAAGCGATGATGTGGCAGAAAGACCCTGTTCATGGGCCTTTTGGTGCCTTCAAACAAGTTTGGAACCATCTCCAACAACAGCAACAAATGATTCAGACTCTTGAGTCCAAATTGATGGGCCTGGCCCAGGCCCAATATTCACCACCATTCAGCAATGGCACCAGCAATCTCAATTGGGCTCCTCAGATTGCTAACAATGTTGGGCAAGCTCCCATGTTATCTTACCAAGAAAAAAATATAATTCCATATCCTTATGTTCATGCCTCTAATGCTTTGCATCCTACACCAGACTTGCTTCAAAGTTGTTCAATAATGCAGCCCAGTCATTTGCCAAGCCAGACAAGGGTTGATAGGCCAGATACAGAACTGTCTTCAGGAATGGATCAACCAAGCCAAGGTAGAGATTTTCAATTTTGTGATGATAAAAGGTCAGTGGACAAATGGGGATGCAGAGAGGGTAGGTAA 681 0.4508 MSNGGANRPACAACRQQRRKCNEQCIFAPYFPPTSAREFEAVHKVFGVSNITKVLTNLDEQGRREAINSFQWEAMMWQKDPVHGPFGAFKQVWNHLQQQQQMIQTLESKLMGLAQAQYSPPFSNGTSNLNWAPQIANNVGQAPMLSYQEKNIIPYPYVHASNALHPTPDLLQSCSIMQPSHLPSQTRVDRPDTELSSGMDQPSQGRDFQFCDDKRSVDKWGCREGR* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3749 226 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Lja4g3749 226 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Lja4g3749 226 PANTHER LOB DOMAIN-CONTAINING PROTEIN 2 4 198 - -
Lja4g3749 226 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 198 - -
Lja4g3749 226 Coils Coil 96 116 - -
Lja4g3749 226 MobiDBLite consensus disorder prediction 180 210 - -
Lja4g3749 226 MobiDBLite consensus disorder prediction 180 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3749 Lja-Chr4 69537119 69537799 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3749 10 105 AS2 family AT1G06280 43.750 2.30e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja4g3749 LOB 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3749 - - cam:101500246 160.229