Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3743 ATGCATATCCCATTCACTAGACCTCAAGAGCTTGCAACAATATGGCTTTCTTATTCATTTACATTCTTTGTTCTAATCAATGGCTACACAGCTGAGGCTGCAAATGGAGACAACAAAGTGATACCCATTGGTGTGATCATTGATGTGAACACTCGTGTTGGGAAAGAACAGCAAGTAGCCATGGAAATTGCAGCTCAAAGTTACAATAACACTTCAAAGACCAACAAGCTAGCTCTCTATTTTCAGGAACCCACCAAAGATCCCTTGAGAGCCACTTCTCTTGCTGAAGACATGATTAAAAGTCAGAAGGTGCAAGTGATTGTAGGGATGAACACATGGGTAGAAGCATCTTCAGTGGCTGAATCATTCCGCGAATCTCGACTTCCTGTTATATCCTTTGCAGCACCTACAATTACCCCACCATTGATGCCAATTCGCTGGCCTTTTCTTGTTAGAATGGCCAACAATTGCACTGCATATGTAAAAAGCGTTGCAGATCTTGTGCATGCTTATAATTGGCATAGTGTAGTAGCTATTTATGAAGATGATGCCTTTGGTGGAGGTTCTGGGATGCTAGCACTTTTATCTGAGGCCCTTCAAGATGTTGGTTCAACAATTGAGTACCGTTTAGCTCTACCTTCACCTACTGATCTTCCTAATCCTAAAGAATTTATTCGCGAAGAGATGTTGAAGATAATTGAAAATACGCAATCTCGGGTATTCATTGTTCTGCAATCCTCATTAGATTTGGCGATTCATTTGTTCAGAGAAGCCTCACAAATGGGACTTATGGATAGAGAATCAGCTTGGATAATCCCAGAGAGGGTAACTAATTTGCTGGACTCAGTCAATAAGTCTTCTATTTCCTACATGGAAGGAGCTTTAGGAATCAAGACCTACTATTCTGAAAATAGCAGTGAGTATCAAGACTTTGAGGCTAAGTTTCGGAGAACTTTTCGCACCAAGAATCCTGAGGAAGATAACAGCAACCCAGGATTTTATGCTCTACAAGCATATGATAGCATTGAAGTTGTTGCACAAGCAGTAGAAAGAATGGCCAGAGACAATGGTAGAGGGGGTAGAAAGACTTTACTTGGAGAAATACTGTCTAGCAATTTTCTTGGTTTAACTGGAGAAATTCAATTTGAAGCACTTCAGCTCTTGCAGAATCCTACCTTAAGGATTGTAAATGTGTATGGGAGGAATTACAGAGAATTAGACTTCTGGACTCTAGAAAGTGGATTCACCACTAGCCTCCCTACTCAACAAGGTAGAAAAAGTGCTTTCAGGAATACAGAAAGTTTAAGTGCTGCAGTGATTTGGCCTGGAAAATCCCTTAGAATTCCAAAAGGCTGGAATCTTCCTACTAAACAAAATCCAATAATAATTGCAGTCCCTGGAAGAACAGCATTTGCAAAGTTTGTCAAGGTTGATTATAACCAAAACCCATATAAGTATACTGGATTCTGCATTGAAATTTTTGAGAAGGTGTTGGGACTTTTGGATTATGATCTTCCATATGAATATCATCCCATCAATGGGACCTATCCTGATCTGGTGCAGCTTGTTTATAATAAGACTTATGATGCTGTAGTTGGCGACATGACCATACTGGCAGAGAGAATGCAATATGTAGATTTTACTGTGCCATATGCAGAATCAGGATTGTCAATGATAGTAAAAGGAAAATCCCAAGAATCTGCATTGATGTTTTTGAAGCCCTTCACCTGGCAAATGTGGGCTGTAACTGGTGCCATCATGATTTACACAATGTTTGTAGTGTGGTTCCTGGAGAGGGGACACAATCCAGAGTTTCATGGCAATTGGAAGAGCCAGCTCAGCACTGCTCTTTTGTTCACTTTCTCCTCGCTATTCCTTGCTCATAGGGAGAAAATGTATTCCAACTTAACTCGTCTAGTGATGGTGTCATGGCTCTTTCTAGTTCTGATTCTTAACTCAAGCTACACTGCTAGTCTTTCTTCAATGCTCACAGTTCAACAACTGCAACCAAATGTGACAAGCATTGAGTGGCTGAAGAAGAACAACATGAAAATTGGTTGTGATGGAGATTCATTTGTCAGGACATACCTTCAGAATGTTGAAAGATTCAAGCCAGAAAACATCATGAATATCAGTAATGAATACAATTATGTCAGTGCATTCCAAAACTCTTCTATAGCAGCTGCTTTTCTTGAACTCCCTTATGAAAAAGTATACATCAGTAAATACTGCAAAGGGTACTCTGCCTCCACACCAACCATCAGATTTGGAGGACTGGGATTTATGTTCCAGAAAGGCTCCCCCCTGGCCAGAGATGTTTCTGTAGCTATATTGAAGCTATTGGAGCAGGGAGAAATGAAGAGCTTAGAAGAGAAATGGTTGAATCCCTCAGGAGAGTGCTTCAAAAATGGAAACTCCAATAGCACAGAAAGTCTGAAGCTTGAAAGTTTCTGGGTTCTGTATGTGATTTCTGGTGGCACTTCCACTATTTGTTTTCTAATTTTCACCATCCATTATCTAAAATCTAGAAAATCACCCCATGATGATGAGGCACACCAAGGCAATGGCGAGAGCAAGTGGAAAAGGATGGTTAGGTTAACTAAGCATGTTTACAGAATGAAGCATAATAATGCAGTTAGGGCACATGAAGATGTTACTGATTGTTCTTCCAGATGGGATAGTGTGATTACACCTGATACACCTCCTGAGCTTCAGCATGCTGTAATGGCTCTTCAATTACCAGAAATCATAACAGTGTCTTCGATGTAA 2769 0.4034 MHIPFTRPQELATIWLSYSFTFFVLINGYTAEAANGDNKVIPIGVIIDVNTRVGKEQQVAMEIAAQSYNNTSKTNKLALYFQEPTKDPLRATSLAEDMIKSQKVQVIVGMNTWVEASSVAESFRESRLPVISFAAPTITPPLMPIRWPFLVRMANNCTAYVKSVADLVHAYNWHSVVAIYEDDAFGGGSGMLALLSEALQDVGSTIEYRLALPSPTDLPNPKEFIREEMLKIIENTQSRVFIVLQSSLDLAIHLFREASQMGLMDRESAWIIPERVTNLLDSVNKSSISYMEGALGIKTYYSENSSEYQDFEAKFRRTFRTKNPEEDNSNPGFYALQAYDSIEVVAQAVERMARDNGRGGRKTLLGEILSSNFLGLTGEIQFEALQLLQNPTLRIVNVYGRNYRELDFWTLESGFTTSLPTQQGRKSAFRNTESLSAAVIWPGKSLRIPKGWNLPTKQNPIIIAVPGRTAFAKFVKVDYNQNPYKYTGFCIEIFEKVLGLLDYDLPYEYHPINGTYPDLVQLVYNKTYDAVVGDMTILAERMQYVDFTVPYAESGLSMIVKGKSQESALMFLKPFTWQMWAVTGAIMIYTMFVVWFLERGHNPEFHGNWKSQLSTALLFTFSSLFLAHREKMYSNLTRLVMVSWLFLVLILNSSYTASLSSMLTVQQLQPNVTSIEWLKKNNMKIGCDGDSFVRTYLQNVERFKPENIMNISNEYNYVSAFQNSSIAAAFLELPYEKVYISKYCKGYSASTPTIRFGGLGFMFQKGSPLARDVSVAILKLLEQGEMKSLEEKWLNPSGECFKNGNSNSTESLKLESFWVLYVISGGTSTICFLIFTIHYLKSRKSPHDDEAHQGNGESKWKRMVRLTKHVYRMKHNNAVRAHEDVTDCSSRWDSVITPDTPPELQHAVMALQLPEIITVSSM* 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3743 922 CDD GluR_Plant 459 794 - -
Lja4g3743 922 Pfam Receptor family ligand binding region 58 398 IPR001828 -
Lja4g3743 922 Pfam Bacterial extracellular solute-binding proteins, family 3 480 795 IPR001638 -
Lja4g3743 922 PIRSF IGluLR_plant 11 900 IPR017103 -
Lja4g3743 922 SMART GluR_14 460 796 IPR001320 GO:0015276|GO:0016020
Lja4g3743 922 Pfam Ligand-gated ion channel 796 826 IPR001320 GO:0015276|GO:0016020
Lja4g3743 922 PANTHER GLUTAMATE RECEPTOR 3.4 21 899 - -
Lja4g3743 922 SUPERFAMILY Periplasmic binding protein-like II 435 795 - -
Lja4g3743 922 Gene3D - 158 330 - -
Lja4g3743 922 CDD PBP1_GABAb_receptor_plant 43 419 IPR044440 -
Lja4g3743 922 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 21 899 - -
Lja4g3743 922 Gene3D - 741 802 - -
Lja4g3743 922 Gene3D - 568 708 - -
Lja4g3743 922 Gene3D - 464 567 - -
Lja4g3743 922 Gene3D - 356 463 - -
Lja4g3743 922 SUPERFAMILY Periplasmic binding protein-like I 38 452 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3743 Lja-Chr4 69483658 69488705 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3743 17 865 Ion Channels AT2G29120 34.011 6.55e-145 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3743 - - aprc:113859865 1321.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3743 4 69483658 69488705 Lja4g3743 4 69483658 69488705 ECH