Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3742 ATGCATATCCCATTCACTAGACCTCAAGAGCTTGCAACAATTTGGCTTTGGCTTTCTTATTCATTCACCTTCTTTGTTCTAATCAATGGCTACACAGCTGAGCCTGCAAATGGAGACATCAAAGTTATACCCATTGGTGTAATCATTGATGTGAACACTGGTGTCGGGAAAGAACAGCAAGTAGCCATGGAAATTGCAGCTCAAAGTTACAATAACACTTCAAAGACCAACAAGCTAGCTCTCTATTTTCAGGAACCCACCAAGGATCCCATGAGAGCCACTTCTCAAGCTGAAGACATGATTAAAAGTCAGAAGGTGCAAGTGATTGTAGGGATGAACACATGGGTAGAAGCAGCTTCAGTGGCTGAATCATTCCGCGAATCTCGACTTCCTGTTATATCCTTTGCAGCACCTACAATTACCCCACCATTGATGGCGATTCGCTGGCCTTTTCTTGTTAGAATGGCCAACAATTGCACTGCATATGTAAAAAGCGTTGCAGATCTTGTGCATGCTTATAATTGGCATAGTGTAGTAGCTATTTATGAAGATGATGCCTTTGGTGGAGGTTCTGGGATGCTAGCACTTTTATCTGAGGCCCTTCAAGATGTTGGTTCAACAATTGAGTACCGTTTAGCTCTACCTTCACCTACTGATCTTCCTAATCCTAAAGAATTTATTCGCGAAGAGATGTTGAAGATAATTGAAAATACGCAATCTCGGGTATTCATTGTTCTGCAATCCTCATTAGATTTGGCGATTCATTTGTTCAGAGAAGCCTCACAAATGGGACTTATGGATAGAGAATCAGCTTGGATAATCCCAGAGAGGGTAACTAATTTGCTGGACTCTGTCAATAAGTCTTCTATTTCCTACTTGGAAGGAGCTTTAGGAATCAAGACCTACTATTCTGAAAATAGCAGTGAGTATCAAGACTTTGAGGCTAAGTTTCGAAGAACTTTTCGCGCCAAGAATCCTGAGGAAGATAACAGCAACCCAGGATTTTATGCTCTACAAGCATATGATAGCATTAAAGTTGTTGCACAAGCAGTAGAAAGAATGGCCAGAGACAATGGCAGAGGGGGTAGAAAGACTTTACTTGGAGAAATACTGTCTAGCAATTTTCTTGGTTTAACTGGAGAAATTCAATTTGAAGCACTTCAGCTCTTGCAGAATCCTACCTTAAGGATTGTAAACGTGTATGGGAGGAATTACAGAGAATTAGACTTCTGGACTCTAGAAAGTGGATTCACCACTAGCCTCCCTACTCAACAAGGTAGAAAAAGTGCTTTCAGGAATACAGAAAGTTTAAGTGCTGCAGTGATTTGGCCTGGAAAATCCCTTAGAATTCCAAAAGGCTGGAATCTTCCTACTAAACAAAATCCAATGAAAATTGCAGTCCCTGGAAGAACCCAATTTTCGAAGTTTGTCAAGGTTGATTATAACCAAAACCCATATAAGTATACTGGATTCTGCATTGAAATTTTTGAGAAGGTGTTGGGACTTTTGGATTATGATCTGCCATATGAATATTATCCCATCAATGGGACCTATCCTGATCTGGTGCAGCTTGTTTATAATAAGACTTATGAGGCTGTTGTTGGCGACGTGACCATACTGGCAAAGAGACTGCAATATGTAGATTTTAGTGTGCCATTTGCAGAATCAGGATTGTCAATGATAGTAAAAGAAAAATCCCAAGAATCTGCATTGATGTTTTTGAAGCCCTTCACCTGGCAATTGTGGGCTGTAACTGGTGCCATCATGATTTACACAATGTTTGTAGTGTGGTTCCTGGAGAGGGAACACAATCCAGAGTTTCATGGCAACTGGAAGAGCCAGTTCAGCACTGCTCTTTTGTTCACTTTCTCCTCGCTTTTCCTTGCTCACAGGGAGAAAATGTACTCCAACTTAACTCGTCTAGTGATGGTGTCATGGCTCTTTCTTGTTCTGATTCTTAACTCAAGCTATACTGCTAGTCTTTCTTCAATGCTCACAGTTCAACAACTGCAACCAAATGTGACTAGCATTGAGTGGCTGAAGAAGAACAACATGAAAATTGGTTGTGATGGGGATTCATTTGTCAGGGCATACCTTCAGAATGTTGAAAAATTCAAGCCAGAGAACATCATTAATATCAGTAGTGATGACAATTATGTCAGTGCATTCCAAAACTCTACTATTGCAGCTGCTTTTCTTGAACTCCCTTATGAAAAAGTATACATCAGTAAATACTGCAAAGGTTACTCTGCCTCCACACCAACCACCAGATTTGGAGGACTGGGATTTGTGTTCCAGAAAGGCTCCCCCCTGGCCAGAGATGTTTCTGTAGCTATGTTGAAGCTAATGGAGCAGGGAGAAATGAAGAGCTTAGAAGAGAAATGGTTGAATCCCTCGGGAGAGTGCTTCAAAAATGGAAACTCCAATAGCACAGAAAGTCTGAAGCTTGAAAGTTTCTGGGTTCTGTATGTGATTTCTGGTGGCACTTCCACTATTTGTTTTCTAATTTTCACCATCCATTATCTAAAATCTAGAAAATCACCCCATGATGATGAGGCACACCAAGGCAATGGCGAGAGCAAGTGGAAAAGGATGGTTAGGTTAACTAAGCATGTTTACAGAATGAAGAATAATAATGCAGTTAGGGCACATGAAGATGTTACTGATTGTTCTTCCAGATGGGATAGTGTGAGTACACCTGATACACCTCCTGAGCTTCAGCATGCTGTAATGGCTCTTCAATTACCAGAAATCATAACAGTGTCTTCGATGTAA 2775 0.4083 MHIPFTRPQELATIWLWLSYSFTFFVLINGYTAEPANGDIKVIPIGVIIDVNTGVGKEQQVAMEIAAQSYNNTSKTNKLALYFQEPTKDPMRATSQAEDMIKSQKVQVIVGMNTWVEAASVAESFRESRLPVISFAAPTITPPLMAIRWPFLVRMANNCTAYVKSVADLVHAYNWHSVVAIYEDDAFGGGSGMLALLSEALQDVGSTIEYRLALPSPTDLPNPKEFIREEMLKIIENTQSRVFIVLQSSLDLAIHLFREASQMGLMDRESAWIIPERVTNLLDSVNKSSISYLEGALGIKTYYSENSSEYQDFEAKFRRTFRAKNPEEDNSNPGFYALQAYDSIKVVAQAVERMARDNGRGGRKTLLGEILSSNFLGLTGEIQFEALQLLQNPTLRIVNVYGRNYRELDFWTLESGFTTSLPTQQGRKSAFRNTESLSAAVIWPGKSLRIPKGWNLPTKQNPMKIAVPGRTQFSKFVKVDYNQNPYKYTGFCIEIFEKVLGLLDYDLPYEYYPINGTYPDLVQLVYNKTYEAVVGDVTILAKRLQYVDFSVPFAESGLSMIVKEKSQESALMFLKPFTWQLWAVTGAIMIYTMFVVWFLEREHNPEFHGNWKSQFSTALLFTFSSLFLAHREKMYSNLTRLVMVSWLFLVLILNSSYTASLSSMLTVQQLQPNVTSIEWLKKNNMKIGCDGDSFVRAYLQNVEKFKPENIINISSDDNYVSAFQNSTIAAAFLELPYEKVYISKYCKGYSASTPTTRFGGLGFVFQKGSPLARDVSVAMLKLMEQGEMKSLEEKWLNPSGECFKNGNSNSTESLKLESFWVLYVISGGTSTICFLIFTIHYLKSRKSPHDDEAHQGNGESKWKRMVRLTKHVYRMKNNNAVRAHEDVTDCSSRWDSVSTPDTPPELQHAVMALQLPEIITVSSM* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3742 924 CDD PBP1_GABAb_receptor_plant 45 421 IPR044440 -
Lja4g3742 924 Gene3D - 570 708 - -
Lja4g3742 924 Pfam Ligand-gated ion channel 798 828 IPR001320 GO:0015276|GO:0016020
Lja4g3742 924 Pfam Receptor family ligand binding region 60 400 IPR001828 -
Lja4g3742 924 Gene3D - 160 332 - -
Lja4g3742 924 SMART GluR_14 464 798 IPR001320 GO:0015276|GO:0016020
Lja4g3742 924 Gene3D - 466 569 - -
Lja4g3742 924 PIRSF IGluLR_plant 11 903 IPR017103 -
Lja4g3742 924 Gene3D - 358 465 - -
Lja4g3742 924 PANTHER GLUTAMATE RECEPTOR 3.4 24 906 - -
Lja4g3742 924 CDD GluR_Plant 461 796 - -
Lja4g3742 924 SUPERFAMILY Periplasmic binding protein-like I 42 454 IPR028082 -
Lja4g3742 924 Pfam Bacterial extracellular solute-binding proteins, family 3 483 797 IPR001638 -
Lja4g3742 924 SUPERFAMILY Periplasmic binding protein-like II 437 797 - -
Lja4g3742 924 Gene3D - 743 804 - -
Lja4g3742 924 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 24 906 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3742 Lja-Chr4 69474784 69479638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3742 25 867 Ion Channels AT2G29120 34.475 5.42e-145 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3742 - - aprc:113859865 1295.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3742 4 69474784 69479638 Lja4g3742 4 69474784 69479638 ECH