Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3735 ATGCATCCTTCTTTGGACATTGTTCTGATCTTCATGCTCCTCATCTTCATTATCATCATCGTCCTCTGCATAATTTACTTGTGCCTTCGCCTCCTTTTTCCCCTTGGCGAAAGGCCACCGGCAAATCCCATCAATGCAGTACTGTTAGATCCGGAGACTAGAATCACCGGCAAAGAACTGGACATGCCTACTGCTTGCGCTGTTTGCCTCGAAGACATCGAGGAAGAGCAACCAGCTCGGCTGATTCCTGGTTGCCACCACGCCTTCCATCTTCAATGTGCTGACACTTGGCTTTCCAGACACCCAATTTGCCCCCTTTGTAGAGGCAGTATATGTTGA 339 0.4897 MHPSLDIVLIFMLLIFIIIIVLCIIYLCLRLLFPLGERPPANPINAVLLDPETRITGKELDMPTACAVCLEDIEEEQPARLIPGCHHAFHLQCADTWLSRHPICPLCRGSIC* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3735 112 ProSiteProfiles Zinc finger RING-type profile. 66 108 IPR001841 -
Lja4g3735 112 SUPERFAMILY RING/U-box 65 111 - -
Lja4g3735 112 SMART ring_2 66 107 IPR001841 -
Lja4g3735 112 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 11 109 - -
Lja4g3735 112 Pfam Ring finger domain 65 108 IPR001841 -
Lja4g3735 112 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 11 109 - -
Lja4g3735 112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 111 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3735 Lja-Chr4 69415446 69415784 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3735 7 111 C3H Transcription Factor Family AT5G42200 41.322 1.22e-21 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3735 K19037 - mnt:21397463 107.457