Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3729 ATGGACTTCCCCAAGAAGCGCAAAACGGAGGAGAACGGCGACGCCGTTTCTCCACTTCCACCAACCGACGCCGTCGCATCCCCAACCATCACCCTCGCCGCAGAAGATATCCGCAAGATCCTCCAACCCTTCTCCCAGGACCAACTCCTGGAGCTTCTCCAATCCGCCTCCCTCCGTCACCCCGACGTACTCGACTCCATCCGCTCCGTCGCCGACCGCGACACCGCCGTCCGAAAACTCTTCGTCCGCGGCCTCGCCTGCGAAACCACCACCGAGACGCTCCGCAGCGTCTTCTCTGCCTACGGCGACCTCGACGAAGCGATTGTCATCTTCGATAAATCCACCGGCAGGTCCAAGGGTTATGGCTTCGTCGTGTTCAAGCATATTGACGGCGCAATTCTTGCTCTCAAGGACCCGAGCAAGAAGATCGACGGGAGGATGACGGTGACGCAGCTGGCGGCGGCTAGATCAGGTGGCTCCTCCGGTGATGTTTCCGCTCGTAAGGTTTTCGTCGGGAATGTTCCGTTTGAGATTCCATCGGAGAGGTTGTTGGATGAGTTTCTCAAGTTTGGTGAGGTTGAAGAGGGTCCGTTAGGGTTTGATAAAGCGAGTGGCAAGGCAAGAGGCTTCGCGTTCTTCGTGTATAAGACTGAGGAAGGTGCTAGAGCTTCGCTTGCGGAGCCTCTGAAGACAATTGATGGGCACCAAGTGATTTGCAAGTTGGCTGTGGATAACAAGAAGCCTAAGCCTGGTGGGGCACACAATGCTTCGGGGTTTCCGGTGGAGACGCCGCAGCCTTCTTCAATGCACGCTCCTGGCCCTAATACCATGATGCCGCCGCAGTACGGTGCTGGGAATCCTTATGGGCAGCCGTATGGTAATCCTGTTCCATCTGGTGGTGGGTATGCGCCTGGAATTGGTGGTGGTGGTGGTGCCCCGCAGTATGGTGGGCCTGGGCCGGTGCCGGTTTCTGGTGCAAGGTTTCCTCCAGCTTCTGGCGGAGGATACCCAGATGGGTCGCAGTATGGTTACCCCTCGCAGCCCATGCCTATGCAAAGACCTCCTACTGGTGGAATGTACCAACCGCCTTATTATTGA 1098 0.5729 MDFPKKRKTEENGDAVSPLPPTDAVASPTITLAAEDIRKILQPFSQDQLLELLQSASLRHPDVLDSIRSVADRDTAVRKLFVRGLACETTTETLRSVFSAYGDLDEAIVIFDKSTGRSKGYGFVVFKHIDGAILALKDPSKKIDGRMTVTQLAAARSGGSSGDVSARKVFVGNVPFEIPSERLLDEFLKFGEVEEGPLGFDKASGKARGFAFFVYKTEEGARASLAEPLKTIDGHQVICKLAVDNKKPKPGGAHNASGFPVETPQPSSMHAPGPNTMMPPQYGAGNPYGQPYGNPVPSGGGYAPGIGGGGGAPQYGGPGPVPVSGARFPPASGGGYPDGSQYGYPSQPMPMQRPPTGGMYQPPYY* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3729 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 157 IPR000504 GO:0003723
Lja4g3729 365 Gene3D - 161 262 IPR012677 -
Lja4g3729 365 SUPERFAMILY RNA-binding domain, RBD 69 157 IPR035979 GO:0003676
Lja4g3729 365 SMART rrm1_1 168 240 IPR000504 GO:0003723
Lja4g3729 365 SMART rrm1_1 79 151 IPR000504 GO:0003723
Lja4g3729 365 MobiDBLite consensus disorder prediction 348 365 - -
Lja4g3729 365 MobiDBLite consensus disorder prediction 299 365 - -
Lja4g3729 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 146 IPR000504 GO:0003723
Lja4g3729 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 235 IPR000504 GO:0003723
Lja4g3729 365 MobiDBLite consensus disorder prediction 1 23 - -
Lja4g3729 365 PANTHER GEO13361P1-RELATED 1 343 - -
Lja4g3729 365 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 343 - -
Lja4g3729 365 Gene3D - 69 158 IPR012677 -
Lja4g3729 365 MobiDBLite consensus disorder prediction 260 274 - -
Lja4g3729 365 MobiDBLite consensus disorder prediction 248 274 - -
Lja4g3729 365 CDD RRM_RBM24_RBM38_like 78 153 - -
Lja4g3729 365 SUPERFAMILY RNA-binding domain, RBD 164 259 IPR035979 GO:0003676
Lja4g3729 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 248 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3729 Lja-Chr4 69319415 69323206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3729 150 341 C2H2 Transcription Factor Family AT2G19380 26.906 1.02e-12 67.4