Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3728 ATGGTTTATACTTCCTTTTGTGACAACAATTCTTCATCTGGTTTCAATCCTAATTTGCATGACGTTGGAGCTAGTAATTCCAATGGTGTTTCGCGAGGTAGGTTGTTATCATCATCGCGTTCAATGGTTTTTGAGAGTGAGAAGTGTGAGCTTGTGAAACCCCCTGCTGCTGCAACTGCAAATAAGGTTGGAACTGGAAAGAATGAGCATTCTGAGGCGAAAGCTTTAGCTGCTTTGAAGAGCCATAGTGAAGCTGAGAGGAGGAGGAGGGAGAGAATAAATGGCCATCTTGCAACACTGCGTGGTCTTGTGCCCTCCACTGAAAAGATGGATAAAGCCACATTACTGGGTGAAGTTATCAGCCAAGTGAAGGAATTAAAGAAGAAAGCAGTGGAAGCAAGCAAAGGTCTTCTCATCCCAACGGATTCTGATGAAGTAAAAGTTGAACTATGCGATAATGGAGAAGAAAATGAATCCATTTCTTACATGGCAACTGTATGCAGTGATTACCAATCTGAGATACTATCTGATCTAAAACAGACACTTGATGCCCTTCAACTACAGCTTGTGAAGGCTGAACTTTCAACATTAGGAGAAAGAATGAAGAATGTGTTTGTGTTTACATGTTGCAAAAGGGAAAATGTGAACATTGAGGCATGTCAAGCTCTTGCTAGTAATGTTCACCAGGCTCTTGGCTCTGTACTTGAAAAGGCTTCTAATGCACTCGAATTCTCGTTCAGAGCTTCAGATCGATGCAAGCGGAGAAGACTAAGCTTCATTGAATCATCTTCTTCCTCATGCAACCATGAATTTTGTTCATGCTGA 825 0.417 MVYTSFCDNNSSSGFNPNLHDVGASNSNGVSRGRLLSSSRSMVFESEKCELVKPPAAATANKVGTGKNEHSEAKALAALKSHSEAERRRRERINGHLATLRGLVPSTEKMDKATLLGEVISQVKELKKKAVEASKGLLIPTDSDEVKVELCDNGEENESISYMATVCSDYQSEILSDLKQTLDALQLQLVKAELSTLGERMKNVFVFTCCKRENVNIEACQALASNVHQALGSVLEKASNALEFSFRASDRCKRRRLSFIESSSSSCNHEFCSC* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3728 274 PANTHER DNA BINDING PROTEIN-LIKE 11 267 - -
Lja4g3728 274 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 126 IPR011598 GO:0046983
Lja4g3728 274 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 130 IPR036638 GO:0046983
Lja4g3728 274 Gene3D - 73 135 IPR036638 GO:0046983
Lja4g3728 274 Pfam Helix-loop-helix DNA-binding domain 81 126 IPR011598 GO:0046983
Lja4g3728 274 SMART finulus 83 132 IPR011598 GO:0046983
Lja4g3728 274 PANTHER TRANSCRIPTION FACTOR BHLH30 11 267 IPR045847 GO:0003700|GO:0006355
Lja4g3728 274 Coils Coil 175 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3728 Lja-Chr4 69313267 69317363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3728 72 258 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 45.213 1.05e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g3728 HLH 7.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3728 - - lja:Lj4g3v0506920.1 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3728 4 69313267 69317363 Lja4g3728 4 69313267 69317363 ECH