Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3703 ATGATAGCTAGCTCCTTCTGCAATGCTGATTCAGTGTTTTCAAGAGAAGAGGGGATAGATGTTAGAAAAATGATCGGACATAAAAGGAGTCCATGCTCTGTTGATCAGAGCAGTTATACCTCTATTGCATCTAAAAAGCAAAAGGCTGATTTATCTATGAGTTCTAAGGATAGGAAGGAAAAGGTTGGAGAACGAATTGTTGCTCTTCAGCAGCTCGTTTCCCCATATGGAAAGACAGATACATCTTCTGTTCTTAATGAGGCGATGGAATACATAGGATTCCTTCATAAACAAGTTAAGCTGCTCAGTGCTCCTTACCTGGAGAGTTCACCAGCAACCATGATGGAGGGCATAGAGCCATGCAGCCTGAGGAATAGAGGATTATGTCTTGTTCCAGTCTCAATTACTATGGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCAATCAAGACCACTTCACCAAAATCTGAGAAGGATATTGTCTCACAATTTCATTGA 504 0.4187 MIASSFCNADSVFSREEGIDVRKMIGHKRSPCSVDQSSYTSIASKKQKADLSMSSKDRKEKVGERIVALQQLVSPYGKTDTSSVLNEAMEYIGFLHKQVKLLSAPYLESSPATMMEGIEPCSLRNRGLCLVPVSITMGVAESNGADIWAPIKTTSPKSEKDIVSQFH* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3703 167 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Lja4g3703 167 CDD bHLH_AtbHLH_like 52 103 IPR045239 -
Lja4g3703 167 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 110 IPR036638 GO:0046983
Lja4g3703 167 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 150 - -
Lja4g3703 167 PANTHER TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1 13 150 - -
Lja4g3703 167 Gene3D - 43 111 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3703 Lja-Chr4 68974968 68980184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3703 24 153 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 55.263 1.36e-50 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3703 - - gmx:100527660 291.967