Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3682 ATGGATCGACCTCCGACCGCTGTTGGGCCTGGAATGGATATGCCGATCATGCATGACAGTGATCGCTATGAGCTTGTGCGTGATATTGGTTGTGGAAATTTCGGGGTAGCTAGGCTCATGAGGGACAAACAGAACGATGAGCTTGTTGCTGTCAAGTATATTGAGCGAGGTGAAAAGATAGATGAAAATGTACAGAGGGAAATTATAAACCACAGATCATTGAGACATCCCAATATAGTCAGGTTCAAGGAGGTTATACTGACACCAACACATTTGGCAATTGTAATGGAATATGCTTCTGGAGGAGAGCTATTTGAGCGGATATGCAATGCTGGGAAGTTCAGTGAGGACGAGGCACGCTTTTTCTTCCAACAACTTATATCAGGTGTTAGCTACTGTCATGCAATGCAAGTGTGCCATCGTGACTTGAAGTTGGAAAACACATTGTTGGATGGTAGCGCAGCTCCGCGTTTGAAAATTTGTGATTTTGGCTATTCAAAGTCCTCTGTGCTACATTCACAACCAAAATCTACTGTTGGTACCCCTGCATATATTGCACCAGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGATTGCAGATGTATGGTCTTGTGGGGTGACCTTATATGTCATGTTGGTGGGTGCATATCCTTTTGAGGATCCAGAAGAACCTAAAAATTTCCGCAAGACGATACATAGGATTTTGAATGTTCAGTATTCAATTCCTGACTATGTTCACATATCTCCCGAATGCCGTCATCTGATCTCAAGGATTTTTGTTGCTGATCCTGCAAAGAGAATAACTATGCCTGAGATTAGAAACCATGAATGGTTTTTGAAAAACCTTCCAACTGATCTAGTGGATGGGAATACGACGAACAACCAGTTTGAGGAGCCTGATCAACCGACGCAAAGCATCGATGAAATCATGCAGATCATTTCTGAGGCTACGATTCCTGCAGCTGGAACTCAATCTCTCAACCAGTATCTTACTGGAAGCTTGGATATTGATGATGACATGGATGATGACTTAGACACTGATCCTGACCTTGATATAGATAGTAGTGGAGAAATAGTTTATGCTATGTGA 1092 0.4231 MDRPPTAVGPGMDMPIMHDSDRYELVRDIGCGNFGVARLMRDKQNDELVAVKYIERGEKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGKFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSAAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYSIPDYVHISPECRHLISRIFVADPAKRITMPEIRNHEWFLKNLPTDLVDGNTTNNQFEEPDQPTQSIDEIMQIISEATIPAAGTQSLNQYLTGSLDIDDDMDDDLDTDPDLDIDSSGEIVYAM* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3682 363 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3682 363 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2E-LIKE 14 358 - -
Lja4g3682 363 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Lja4g3682 363 PANTHER SERINE/THREONINE KINASE 14 358 - -
Lja4g3682 363 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3682 363 SUPERFAMILY Protein kinase-like (PK-like) 15 319 IPR011009 -
Lja4g3682 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Lja4g3682 363 Gene3D Transferase(Phosphotransferase) domain 1 99 287 - -
Lja4g3682 363 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Lja4g3682 363 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3682 363 CDD STKc_SnRK2-3 22 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3682 Lja-Chr4 68695756 68698936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3682 16 308 CBL-interacting serine-threonine protein kinases AT4G24400 41.042 1.11e-69 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Lja4g3682 Pkinase 9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3682 K14498 - qsu:112032862 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0369 2 3417383 3423156 Lja4g3682 4 68695756 68698936 PCT