Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3681 ATGGGTTCTGTTCCTGCAGAACTGAGCTTGGATTTAAGACCCAGTTTCGTTCCCAAAACCGTCGCTAATTTCCTCTACGAACTCTCCACCATTCCTCGTTCCACCGATAAGCTTTCCAGGCTCCATGATTTCCTCGCCCGATTGGAAGACGAGCTCAGGAAGATCGATGCCTTCAAACGCGAGCTTCCTCTCTGCATGCTCCTCCTAAACGACGCAATTTTGGTTTTGAAGGAGGAATCAGAAAAATGCAGGGCTCATAATTCTCCACCAGTGTTGGAAGAGTTTATTCCATTGAAGAAAGAGCATGATCAGAGTGAGGAAAATGATAGCAAGGAGAATGAATGCAGGGATAAGAAGAATTGGATGAGTTCTGTTCAGCTTTGGAACAATACTACCCCTAGAAAAGCCTGTGATCAAATTCCAATCCAACATCTTAATTATAAATTAGATACCAAGAAAAATGAAGAAGGGAACTCTGTGGTTGCTGAGGACCCTTTCCAATCTTGTAATGTTAAAAATGGAGGGAGTGCTTTTCTGCCTTTCTCCACATACTCTTCTATCCCCGTGACAACCGTGGCACTGCAAGCAGCCAAAGAAGAAAAGGAAGACACTGTTTTGAATAGACTTTCTCTTCTAACCCCTGGGGTGAAGAGTTTGAGGGAAGGATTTGGTTCAAGAGGGTCCAGAAGCAGCAGCTCCAGCAGGGCTGTTTCTTCCTCTTCTCCTCCTATCGTGCCGCCAAGTTTGCGTGCAGGATCTCTTCAGCAGCAGCAGAATGCTAGGAAACAGAGGAGATGCTGGTCCCCGGAGTTGCACCGCCGATTTGTTAATGCATTGCAGAAGCTTGGAGGTTCTCAAGCAGCAACTCCAAAGCAAATTAGAGAACTCATGCAGGTTGATGGCCTGACCAATGATGAAGTGAAGAGCCACTTGCAAAAATACCGACTTCATACTCGGAGAGTTCCGGCTGCAACCGCTAATCAGCCGTGTGTAGTTCTTGGAGGTTTGTGGATGTCCCAAGATCAGCACAACGACTCTTCAAAGGGTAGAAGTTCTGTGTCCGGTTCGCCGCAAAGTCCCCTTCATTTAGCTGCAGGTTCCAGGGGAGGGACATCCCCGACCGAGGGTGACAGCATGGAGGATGATGATGATACTAAATCCGAGAGTTATAGCTGGAGAAGTCACATTCACAAACCAGGACAAGTTTATGTATAG 1215 0.4683 MGSVPAELSLDLRPSFVPKTVANFLYELSTIPRSTDKLSRLHDFLARLEDELRKIDAFKRELPLCMLLLNDAILVLKEESEKCRAHNSPPVLEEFIPLKKEHDQSEENDSKENECRDKKNWMSSVQLWNNTTPRKACDQIPIQHLNYKLDTKKNEEGNSVVAEDPFQSCNVKNGGSAFLPFSTYSSIPVTTVALQAAKEEKEDTVLNRLSLLTPGVKSLREGFGSRGSRSSSSSRAVSSSSPPIVPPSLRAGSLQQQQNARKQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPAATANQPCVVLGGLWMSQDQHNDSSKGRSSVSGSPQSPLHLAAGSRGGTSPTEGDSMEDDDDTKSESYSWRSHIHKPGQVYV* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3681 404 MobiDBLite consensus disorder prediction 224 264 - -
Lja4g3681 404 Coils Coil 41 61 - -
Lja4g3681 404 MobiDBLite consensus disorder prediction 220 265 - -
Lja4g3681 404 MobiDBLite consensus disorder prediction 341 404 - -
Lja4g3681 404 MobiDBLite consensus disorder prediction 341 361 - -
Lja4g3681 404 SUPERFAMILY Homeodomain-like 260 320 IPR009057 -
Lja4g3681 404 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 398 IPR044787 GO:0003700|GO:0006355
Lja4g3681 404 Pfam Myb-like DNA-binding domain 264 315 IPR001005 -
Lja4g3681 404 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 262 317 IPR006447 GO:0003677
Lja4g3681 404 MobiDBLite consensus disorder prediction 98 117 - -
Lja4g3681 404 Gene3D - 261 319 - -
Lja4g3681 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 319 IPR017930 -
Lja4g3681 404 PANTHER TRANSCRIPTION FACTOR HHO6 7 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3681 Lja-Chr4 68672912 68675916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3681 6 338 G2-like Transcription Factor Family AT2G03500 40.922 3.00e-63 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja4g3681 Myb_DNA-binding 3.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3681 - - lja:Lj4g3v0571920.1 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0367 2 3379224 3381179 Lja4g3681 4 68672912 68675916 PCT